WormBase Tree Display for Sequence: Y53F4B

Y53F4B DNA: Y53F4B 227606
  SMap: S_child (13)
  Structure: From: Source: CHROMOSOME_II
    Overlap_right: Y1H11 227191
    Overlap_left: E01F3
    Clone_left_end: H17G24 178856
      H15N18 32164
      Y53F4B 1
    Clone_right_end: E01F3 100
      H15N18 56555
      H17G24 221749
      Y46F4 224463
      Y53F4 227206
      Y53F4B 227606
  DB_info: Database: EMBL NDB_AC AL132949
        NDB_SV AL132949.3
    Secondary_accession: Z92860
    DB_remark: [021017 dl] Added 400 bp to the right end of the clone.
      [121025] Sequence correction: SNP 0 bases @ 30107
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Smye R
    From_laboratory: HX
    Date_directory: 991014
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: Y53F4B
  Properties: Genomic_canonical
    Checksum: MD5: ec8ebe220a67b992d5f3c5becd56c9ca
    Status: Finished: 14 Oct 1999 00:00:00
      Submitted: 14 Oct 1999 00:00:00
      Annotated: 10 Dec 1999 00:00:00
  Map: Sequence-II
  Interpolated_map_position: II 24.0012
  Assembly_tags: Clone right end 100 97 E01F3
      56555 56552 H15N18
      221749 221746 H17G24
      224463 224458 Y46F4
      227206 227201 Y53F4
    Finished Left 1 4 Y53F4B
    annotation 93081 93129 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Sequence from reads from a short insert library derived from a single pUC clone. Assembly is confirmed by another bridging pUC clone.
      94511 94539 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Sequence from reads from a short insert library derived from a single pUC clone. Part of a direct repeat.
      95161 95307 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Sequence from reads from a short insert library derived from a single pUC clone.
      112760 112763 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Sequence from two terminator reads and one primer read from a single pUC clone.
      116333 116333 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - One clone suggests 8 A's. 6 clones suggest 9
      144074 144126 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Sequence from reads from a short insert library derived from a single pUC clone. In tandem repeat. In tandem repeat.
      168233 168253 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Sequence from a primer read and a terminator read from the same pUC clone.
      76213 76213 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - F52E3 and H27E01 reads have 13 A's whilst Y53F4 reads suggest 14.
      82254 82367 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Sequence from reads from a short insert library derived from a single pUC clone. Assembly is confirmed by another pUC clone bridging this region.
      98286 98286 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - 3 clones suggest 10 A's, 4 clones suggest 11 A's. Edited to 11.
      98556 98556 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - Reads from a short insert library derived from a pUC clone suggest CTTC whilst all other reads suggest CTCC.
      143319 143366 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - In inverted repeat.
      143913 144612 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Tandem repeat of unknown size.
        145907 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Tandem repeat of unknown size.
      161972 162437 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Sequence from reads from a short insert library derived from a single pUC clone. Assembly confirmed by another bridging pUC clone.
    Clone left end 178856 178859 H17G24
      32164 32167 H15N18
    Finished Right 227201 227206 Y53F4B
  Method: Genomic_canonical