WormBase Tree Display for Sequence: Y7A9B

Y7A9B DNA: Y7A9B 5723
  SMap: S_child: Gene_child: WBGene00172104 2312 2332
        WBGene00048449 3746 3726
        WBGene00046399 2315 2335
        WBGene00047400 5156 5136
        WBGene00048761 5157 5137
        WBGene00166823 5359 5339
        WBGene00166050 4440 4460
        WBGene00172897 4106 4086
        WBGene00046980 5360 5340
      CDS_child: Y7A9B.gc1 1098 2078
      Transcript: Y7A9B.1 2315 2335
        Y7A9B.2 5360 5340
        Y7A9B.3 5156 5136
        Y7A9B.4 3746 3726
        Y7A9B.5 5157 5137
        Y7A9B.6 4440 4460
        Y7A9B.7 5359 5339
        Y7A9B.8 2312 2332
        Y7A9B.9 4106 4086
      PCR_product: sjj_Y7A9B.1 285 1228
        smd_F38E9.3_1 16 1196
      Allele (98)
      Feature_object: WBsf998834 321 471
        WBsf998835 961 1111
        WBsf998836 2661 2811
        WBsf998837 3521 3671
        WBsf1018846 2681 2831
        WBsf1018847 3441 3591
        WBsf481646 5233 5261
      Feature_data: Y7A9B:TranscriptionallyActiveRegion 1 5723
        Y7A9B:TRF 1 5723
        Y7A9B:Dust 1 5723
      Homol_data (11)
  Structure: From: Source: CHROMOSOME_IV
    Overlap_right: F38C2 5620
    Overlap_left: H25K10
    Clone_left_end: F38C2 5620
      Y7A9B 1
    Clone_right_end: H25K10 104
      Y7A9B 5723
  DB_info: Database: EMBL NDB_AC Z99285
        NDB_SV Z99285.1
    Secondary_accession: Z95312
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: McMurray AA
    From_laboratory: HX
    Date_directory: 970721
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: Y7A9B
  Properties: Genomic_canonical
    Checksum: MD5: 5e7ce446bbbf38ba79244a00792c2da1
    Status: Finished: 21 Jul 1997 00:00:00
      Submitted: 17 Sep 1997 00:00:00
      Annotated: 01 Jan 1980 00:00:00
  Map: Sequence-IV Ends: Left: 7867
        Right: 7874
  Interpolated_map_position: IV 14.6178
  Assembly_tags: Finished Left 1 4 Y7A9B
    Clone right end 101 104 H25K10
    annotation 2350 2585 tandem repeat across bases 59560 -60850 with typical repeat element ofTTGTTACACGGAAAATAGA (a 19mer).The right hand break point of the repeat comes only from the underlyingfosmid (H27I04). THe length of the repeat isconfirmed by restriction digest of theYAC.
      2890 2992 tandem repeat across bases 59560 -60850 with typical repeat element ofTTGTTACACGGAAAATAGA (a 19mer).The right hand break point of the repeat comes only from the underlyingfosmid (H27I04). THe length of the repeat isconfirmed by restriction digest of theYAC.
      2586 2889 tandem repeat across bases 59560 -60850 with typical repeat element ofTTGTTACACGGAAAATAGA (a 19mer).The right hand break point of the repeat comes only from the underlyingfosmid (H27I04). THe length of the repeat isconfirmed by restriction digest of theYAC.
      2993 3290 tandem repeat across bases 59560 -60850 with typical repeat element ofTTGTTACACGGAAAATAGA (a 19mer).The right hand break point of the repeat comes only from the underlyingfosmid (H27I04). THe length of the repeat isconfirmed by restriction digest of theYAC.
      3291 3620 tandem repeat across bases 59560 -60850 with typical repeat element ofTTGTTACACGGAAAATAGA (a 19mer).The right hand break point of the repeat comes only from the underlyingfosmid (H27I04). THe length of the repeat isconfirmed by restriction digest of theYAC.
      3619 3614 Deletion in read stolen from H27I04. Cut off data matches bases 59538 - 59783.
      3618 3613 Deletion in stolen read from H27I04.
          Deletion in stolen reads from H27I04. Bases in the cut off region of this read match at bases 59261 - 59590.
    Finished Right 5720 5723 Y7A9B
    Clone left end 5620 5623 F38C2
  Method: Genomic_canonical