WormBase Tree Display for Sequence: ZK384
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| ZK384 | DNA | ZK384 | 9026 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00013972 | 5698 | 4015 | |
| WBGene00003356 | 7900 | 8007 | ||||
| WBGene00013973 | 2896 | 1391 | ||||
| WBGene00269383 | 9002 | 7906 | ||||
| WBGene00013971 | 3208 | 3989 | ||||
| CDS_child (40) | ||||||
| Transcript | ZK384.5 | 7900 | 8007 | |||
| ZK384.5b | 7973 | 7992 | ||||
| ZK384.7 | 9002 | 7906 | ||||
| ZK384.1.1 | 3208 | 3989 | ||||
| ZK384.2.1 | 5698 | 4015 | ||||
| ZK384.3.1 | 2896 | 1391 | ||||
| PCR_product | cenix:179-b10 | 4442 | 5156 | |||
| cenix:217-e10 | 3230 | 3373 | ||||
| cenix:26-e9 | 2392 | 2901 | ||||
| mv_ZK384.1 | 3225 | 3987 | ||||
| mv_ZK384.2 | 4091 | 5682 | ||||
| p_ZK384.2_93 | 5684 | 7683 | ||||
| sjj_ZK384.1 | 3123 | 3994 | ||||
| sjj_ZK384.2 | 4082 | 5847 | ||||
| sjj_ZK384.3 | 1563 | 2712 | ||||
| Allele (170) | ||||||
| Oligo_set | Aff_ZK384.1 | 3224 | 3989 | |||
| Aff_ZK384.2 | 5644 | 4089 | ||||
| Feature_object (27) | ||||||
| Feature_data | ZK384:TranscriptionallyActiveRegion | 1 | 9026 | |||
| ZK384:ChIPSeqTF | 1 | 9026 | ||||
| ZK384:TRF | 1 | 9026 | ||||
| ZK384:Dust | 1 | 9026 | ||||
| ZK384:inverted | 1 | 9026 | ||||
| Homol_data (19) | ||||||
| Structure | From | Source | CHROMOSOME_V | |||
| Overlap_right | F11D11 | 8923 | ||||
| Overlap_left | Y17D7C | |||||
| Clone_left_end | ZK384 | 1 | ||||
| DB_info | Database | EMBL | NDB_AC | Z82092 | ||
| NDB_SV | Z82092.1 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Ainscough R | ||||
| From_laboratory | HX | |||||
| Date_directory | 980514 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | ZK384 | ||||
| Reference | WBPaper00014329 | |||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | ba0080eced8da3f9382b57144aef8052 | ||||
| Status | Finished | 14 May 1998 00:00:00 | ||||
| Submitted | 06 Nov 1996 00:00:00 | |||||
| Annotated | 01 Jan 1980 00:00:00 | |||||
| Map | Sequence-V | Ends | Left | 10783 | ||
| Right | 10803 | |||||
| Interpolated_map_position | V | 17.496 | ||||
| Assembly_tags | Finished Left | 4 | 1 | ZK384 | ||
| Clone left end | 4 | 1 | ZK384 | |||
| Finished Right | 2238 | 2235 | ZK834 | |||
| 9026 | 9023 | ZK384 | ||||
| annotation | 5199 | 5217 | this read has an extra 2 copies of the repeat TTAGGC, insert at end of pink tag GCTTAGGCTTAG (to right) | |||
| 5340 | 5345 | this read has a deletion of one copy of the repeat TTAGGC | ||||
| 5168 | 5244 | repeat, consisting of TTAGGC typically. one m13 has an extra 2 copies. | ||||
| 5304 | 5472 | more of repeat, typical unit TTAGGC, with variations. One m13 has deleted a copy | ||||
| Method | Genomic_canonical |
