WormBase Schema for Model: Variation
expand all nodes | collapse all nodes
?Variation | Evidence | #Evidence | |||||
---|---|---|---|---|---|---|---|
Name | Public_name | UNIQUE | ?Variation_name | XREF | Public_name_for | ||
Other_name | ?Variation_name | XREF | Other_name_for | #Evidence | |||
Rearrangement | ?Rearrangement | XREF | Variation | ||||
HGVSg | UNIQUE | Text | #Evidence | ||||
Sequence_details (10) | |||||||
Variation_type (8) | |||||||
Origin | Species | UNIQUE | ?Species | ||||
Strain | ?Strain | XREF | Variation | #Evidence | |||
Component_of_genotype | ?Genotype | XREF | Variation | ||||
Laboratory | ?Laboratory | ||||||
Author | ?Author | ||||||
Person | ?Person | ||||||
Analysis | ?Analysis | ||||||
Corresponding_transgene | UNIQUE | ?Transgene | XREF | Corresponding_variation | |||
Production_method | CRISPR_Cas9 | ||||||
Homologous_recombination | |||||||
MosSci | |||||||
MosDEL | |||||||
NHEJ | |||||||
TALENs | |||||||
ZFNNHEJ_repair | |||||||
ZFNHR_repair | |||||||
Expr_pattern | ?Expr_pattern | XREF | Variation | #Evidence | |||
DB_info | Database | ?Database | ?Database_field | UNIQUE | ?Text | ||
KO_consortium_allele | |||||||
NBP_allele | |||||||
NemaGENETAG_consortium_allele | |||||||
Detection_method | Text | ||||||
Positive_clone | ?Clone | XREF | Positive_variation | #Evidence | |||
Nature_of_variation | UNIQUE | Polymorphic | |||||
Synthetic | |||||||
History | Merged_into | UNIQUE | ?Variation | XREF | Acquires_merge | ||
Acquires_merge | ?Variation | XREF | Merged_into | ||||
Split_from | UNIQUE | ?Variation | XREF | Split_into | |||
Split_into | ?Variation | XREF | Split_from | ||||
Status | UNIQUE | Live | #Evidence | ||||
Suppressed | #Evidence | ||||||
Dead | #Evidence | ||||||
Linked_to | ?Variation | XREF | Linked_to | ||||
Affects | Gene | ?Gene | XREF | Allele | #Molecular_change | ||
Predicted_CDS | ?CDS | XREF | Variation | #Molecular_change | |||
Transcript | ?Transcript | XREF | Variation | #Molecular_change | |||
Pseudogene | ?Pseudogene | XREF | Variation | #Molecular_change | |||
Feature | ?Feature | XREF | Associated_with_variation | ||||
Interactor | ?Interaction | XREF | Variation_interactor | ||||
Possibly_affects | ?Gene | XREF | Possibly_affected_by | #Evidence | |||
Isolation | Date | DateType | |||||
Mutagen | UNIQUE | Text | #Evidence | ||||
Forward_genetics | Text | #Evidence | |||||
Reverse_genetics | Text | #Evidence | |||||
Transposon_excision | ?Transposon_family | ||||||
Derived_from_variation | ?Variation | XREF | Derivative | ||||
Derivative | ?Variation | XREF | Derived_from_variation | ||||
Derived_from_construct | ?Construct | XREF | Engineered_variation | ||||
Genetics | Gene_class | ?Gene_class | XREF | Variation | |||
Mating_efficiency | male | UNIQUE | ME0_Mating_not_successful | #Evidence | |||
ME1_Mating_rarely_successful | #Evidence | ||||||
ME2_Mating_usually_successful | #Evidence | ||||||
ME3_Mating_always_successful | #Evidence | ||||||
hermaphrodite | UNIQUE | HME0_Mating_not_successful | #Evidence | ||||
HME1_Mating_rarely_successful | #Evidence | ||||||
HME2_Mating_usually_successful | #Evidence | ||||||
HME3_Mating_always_successful | #Evidence | ||||||
Map | ?Map | XREF | Variation | #Map_position | |||
Interpolated_map_position | UNIQUE | ?Map | UNIQUE | Float | |||
Mapping_data | 2_point | ?2_point_data | |||||
Multi_point | ?Multi_pt_data | ||||||
Pos_neg_data | ?Pos_neg_data | ||||||
In_2_point | ?2_point_data | ||||||
In_multi_point | ?Multi_pt_data | ||||||
In_pos_neg_data | ?Pos_neg_data | ||||||
Marked_rearrangement | ?Rearrangement | XREF | By_variation | ||||
Description | Phenotype | ?Phenotype | XREF | Variation | #Phenotype_info | ||
Phenotype_remark | ?Text | #Evidence | |||||
Phenotype_not_observed | ?Phenotype | XREF | Not_in_Variation | #Phenotype_info | |||
Disease_info | Models_disease | ?DO_term | XREF | Disease_model_variation | |||
Modifies_disease | ?DO_term | XREF | Disease_modifier_variation | ||||
Models_disease_in_annotation | ?Disease_model_annotation | XREF | Variation | ||||
Modifies_disease_in_annotation | ?Disease_model_annotation | XREF | Modifier_variation | ||||
Modifies_disease_asserted_variation | ?Disease_model_annotation | XREF | Asserted_variation | ||||
Reference | ?Paper | XREF | Allele | ||||
Remark | ?Text | #Evidence | |||||
Method | UNIQUE | ?Method | |||||
Supporting_data | Movie | ?Movie | XREF | Variation | #Evidence |