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WormBase Tree Display for CDS: Bm7624b

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Name Class

Bm7624bEvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr1_scaffold_001
StructureSource_exons (27)
DB_infoDB_remarkBMA-UNC-16 protein; contains similarity to Pfam domains PF09744 (JNK_SAPK-associated protein-1), PF16471 (JNK-interacting protein leucine zipper II), PF19056 (WD40 repeated domain); contains similarity to Interpro domains IPR036322 (WD40-repeat-containing domain superfamily), IPR019143 (JNK/Rab-associated protein-1, N-terminal), IPR039911 (JNK-interacting protein 3/4), IPR032486 (JNK-interacting protein, leucine zipper II)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
Prediction_statusConfirmed
IsoformCurator_confirmedWBPerson4055
VisibleGeneWBGene00227885
Corresponding_transcriptBm7624b.1
Corresponding_proteinBM45804
Matching_cDNAbrugia_GG7372|c7_g2_i5Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_722_2Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:000007818.2904From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
19.7762From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
40.4627From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
40.9103From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
41.8641From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
43.0941From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
46.0944From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
WBls:000008037.2513From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
40.466From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
41.8442From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
46.0209From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
WBls:0000081 (23)
WBls:000008213.7309From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
15.9989From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
19.3388From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
53.4205From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
55.8143From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
WBls:0000083 (80)
WBls:000009281.6389From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
81.9397From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:000009418.0345From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
21.6429From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:000009714.4471From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
25.6032From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
30.0139From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
30.6456From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
40.1513From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
63.3101From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
WBls:000066222.1132From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
40.8555From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066312.2945From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Last_reviewed29 May 2018 10:04:29WBPerson4055
Remark[180529 mh6] This structure has been created based on the RNASeq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated