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WormBase Tree Display for CDS: Bm7972

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Name Class

Bm7972EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr3_scaffold_001
StructureSource_exons122
627656
44654564
53755448
66256792
81748244
1282912865
1438214530
1619216267
1821518383
1866218787
2007120135
2085220972
2143221644
2201022126
2293523043
3745137573
4048640557
4077840922
4130741376
4169741816
4249942605
4333943480
4429744466
4522845355
4634646480
4714247369
5196552123
5246852696
5347353599
5444454630
5642856594
5820858433
5897559076
5958659654
6009060194
6069260917
6208962184
6277662935
6328563482
6399664131
DB_infoDatabaseTrEMBLUniProtAccA0A0J9YBE3
UniProtUniProtAccA0A0J9YBE3
AlphaFoldentryA0A0J9YBE3
Protein_idBm_v4_Chr3_scaffold_001CDQ064041
DB_remarkBMA-UNC-13 protein; contains similarity to Pfam domains PF00130 (Phorbol esters/diacylglycerol binding domain (C1 domain)), PF00168 (C2 domain), PF06292 (MUN domain); contains similarity to Interpro domains IPR020454 (Diacylglycerol/phorbol-ester binding), IPR046349 (C1-like domain superfamily), IPR010439 (MUN domain), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR027080 (Protein Unc-13), IPR035892 (C2 domain superfamily), IPR000008 (C2 domain)
OriginFrom_laboratoryELG
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byaugustus
Prediction_statusPartially_confirmed
VisibleGeneWBGene00228233
Corresponding_transcriptBm7972.1
Corresponding_proteinBM45555
Matching_cDNAAW172167Inferred_automaticallytranscript_builder.pl
brugia_GG2860|c1_g1_i1Inferred_automaticallytranscript_builder.pl
Brief_identificationconserved hypothetical protein,hypothetical proteinAccession_evidenceTIGRBm1_11345
RNASeq_FPKMWBls:000007813.4329From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
15.1146From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
16.1429From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
3.67132From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
4.32098From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
6.34329From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
6.42607From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
WBls:00000800.975283From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
1.02305From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
1.2462From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
1.60279From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
WBls:0000081 (23)
WBls:00000822.69969From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
2.8268From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
2.86131From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
2.99389From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
3.51865From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
WBls:0000083 (79)
WBls:00000922.18164From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
2.49027From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:00000943.34807From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
3.44977From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
WBls:00000970.710882From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
0From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
1.46688From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
1.49296From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
3.93809From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
4.22104From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
WBls:00006627.3674From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
7.9217From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:00006633.65369From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Last_reviewed14 Apr 2016 12:39:02WBPerson4055
Remark[160414 mh6] merged with the two upstream genes based on cufflinks and comparaCurator_confirmedWBPerson4055
Methodcurated