WormBase Tree Display for CDS: C53A5.3
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| C53A5.3 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C53A5 | |||
| Structure | Source_exons | 1 | 174 | |||
| 221 | 338 | |||||
| 384 | 1250 | |||||
| 1344 | 1570 | |||||
| DB_info | Database | KEGG | KEGG_id | 3.5.1.98 | ||
| SwissProt | UniProtAcc | O17695 | ||||
| UniProt | UniProtAcc | O17695 | ||||
| UniProt_GCRP | UniProtAcc | O17695 | ||||
| AlphaFold | entry | O17695 | ||||
| NCBI_protein | GI_number | GI:3875199 | ||||
| TREEFAM | TREEFAM_ID | TF106171 | ||||
| Protein_id | CHROMOSOME_V | CAB03984 | 1 | |||
| DB_remark | HDA-1 protein; contains similarity to Pfam domain PF00850 (Histone deacetylase domain); contains similarity to Interpro domains IPR023696 (Ureohydrolase domain superfamily), IPR000286 (Histone deacetylase family), IPR003084 (Histone deacetylase), IPR023801 (Histone deacetylase domain), IPR037138 (Histone deacetylase domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00001834 | ||||
| Corresponding_transcript | C53A5.3.1 | |||||
| Corresponding_protein | CE08952 | |||||
| Corresponding_PCR_product | cenix:10-a2 | |||||
| mv_C53A5.3 | ||||||
| sjj_C53A5.3 | ||||||
| Corresponding_oligo_set (14) | ||||||
| Matching_cDNA (65) | ||||||
| RNAi_result (74) | ||||||
| Microarray_results (15) | ||||||
| Brief_identification | Histone deacetylase 1 | Accession_evidence | UniProt | SP:O17695 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf008469 | |||||
| Method | curated |
