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WormBase Tree Display for CDS: CBG00998

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Name Class

CBG00998SMapS_parentSequencecb25.fpc0022b
StructureSource_exons1100
275466
582691
23022406
24632558
26032755
DB_infoDatabaseUniProtUniProtAccA8WP51
UniProtIdA8WP51_CAEBR
TrEMBLUniProtAccA8WP51
UniProt_GCRPUniProtAccA8WP51
TREEFAMTREEFAM_IDTF315976
Protein_idcb25.fpc0022bCAP222572
DB_remarkCBR-UNC-4 protein; contains similarity to Pfam domain PF00046 (Homeodomain); contains similarity to Interpro domains IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily)
OriginFrom_laboratoryCB
SpeciesCaenorhabditis briggsae
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00024297
Corresponding_transcriptCBG00998.1
Corresponding_proteinCBP35776
Corresponding_oligo_setGPL8303_CB6_WBGene00024297_A
GPL14143_CBG00998_309-368_0.860_4_B
GPL14143_CBG00998_548-607_0.814_27_C
GPL14143_CBG00998_678-737_0.807_31_A
Matching_cDNAbriggsae_GG6651|c0_g2_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL8303_CB6_WBGene00024297_A
GPL14143_CBG00998_309-368_0.860_4_B
GPL14143_CBG00998_548-607_0.814_27_C
GPL14143_CBG00998_678-737_0.807_31_A
RNASeq_FPKM (9)
Last_reviewed31 Aug 2016 10:21:16WBPerson4025
Remark[gffnote] orthologous to F26C11.2 by best mutual match (eval=3e-98) ; Ortholog F26C11.2 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP05881 ; Gene WBGene00024297
[20080722 tb] Modified based on Jigsaw gene ContigchrII.briggsae.jigsaw.66
[160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG6651|c0_g2_i1-chrII-1'.Curator_confirmedWBPerson4025
Methodcurated