WormBase Tree Display for CDS: CBG00998
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CBG00998 | SMap | S_parent | Sequence | cb25.fpc0022b | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 100 | ||
275 | 466 | ||||
582 | 691 | ||||
2302 | 2406 | ||||
2463 | 2558 | ||||
2603 | 2755 | ||||
DB_info | Database | UniProt | UniProtAcc | A8WP51 | |
UniProtId | A8WP51_CAEBR | ||||
TrEMBL | UniProtAcc | A8WP51 | |||
UniProt_GCRP | UniProtAcc | A8WP51 | |||
TREEFAM | TREEFAM_ID | TF315976 | |||
Protein_id | cb25.fpc0022b | CAP22257 | 2 | ||
DB_remark | CBR-UNC-4 protein; contains similarity to Pfam domain PF00046 (Homeodomain); contains similarity to Interpro domains IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily) | ||||
Origin | From_laboratory | CB | |||
Species | Caenorhabditis briggsae | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Visible | Gene | WBGene00024297 | |||
Corresponding_transcript | CBG00998.1 | ||||
Corresponding_protein | CBP35776 | ||||
Corresponding_oligo_set | GPL8303_CB6_WBGene00024297_A | ||||
GPL14143_CBG00998_309-368_0.860_4_B | |||||
GPL14143_CBG00998_548-607_0.814_27_C | |||||
GPL14143_CBG00998_678-737_0.807_31_A | |||||
Matching_cDNA | briggsae_GG6651|c0_g2_i1 | Inferred_automatically | transcript_builder.pl | ||
Microarray_results | GPL8303_CB6_WBGene00024297_A | ||||
GPL14143_CBG00998_309-368_0.860_4_B | |||||
GPL14143_CBG00998_548-607_0.814_27_C | |||||
GPL14143_CBG00998_678-737_0.807_31_A | |||||
RNASeq_FPKM (9) | |||||
Last_reviewed | 31 Aug 2016 10:21:16 | WBPerson4025 | |||
Remark | [gffnote] orthologous to F26C11.2 by best mutual match (eval=3e-98) ; Ortholog F26C11.2 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP05881 ; Gene WBGene00024297 | ||||
[20080722 tb] Modified based on Jigsaw gene ContigchrII.briggsae.jigsaw.66 | |||||
[160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG6651|c0_g2_i1-chrII-1'. | Curator_confirmed | WBPerson4025 | |||
Method | curated |