WormBase Tree Display for CDS: CBG04550a
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CBG04550a | SMap | S_parent | Sequence | cb25.fpc0090 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 180 | ||
370 | 423 | ||||
712 | 882 | ||||
1026 | 1123 | ||||
1170 | 1309 | ||||
1360 | 1441 | ||||
1490 | 1630 | ||||
1674 | 2163 | ||||
2220 | 2462 | ||||
DB_info | Database | UniProt | UniProtAcc | A8WXW5 | |
UniProtId | A8WXW5_CAEBR | ||||
DB_remark | CBR-UNC-61 protein; contains similarity to Pfam domain PF00735 (Septin); contains similarity to Interpro domains IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR030379 (Septin-type guanine nucleotide-binding (G) domain) | ||||
Origin | From_laboratory | CB | |||
Species | Caenorhabditis briggsae | ||||
Properties | Coding | CDS | |||
Prediction_status | Partially_confirmed | ||||
Isoform | Curator_confirmed | WBPerson4025 | |||
Visible | Gene | WBGene00027195 | |||
Corresponding_transcript | CBG04550a.1 | ||||
Corresponding_protein | CBP31069 | ||||
Corresponding_oligo_set | GPL8303_CB6_WBGene00027195_A | ||||
GPL8303_CB6_WBGene00027195_B | |||||
GPL14143_CBG04550_933-992_0.907_36_C | |||||
GPL14143_CBG04550_1139-1198_0.929_20_A | |||||
GPL14143_CBG04550_1250-1309_0.949_8_B | |||||
Microarray_results | GPL8303_CB6_WBGene00027195_A | ||||
GPL8303_CB6_WBGene00027195_B | |||||
GPL14143_CBG04550_933-992_0.907_36_C | |||||
GPL14143_CBG04550_1139-1198_0.929_20_A | |||||
GPL14143_CBG04550_1250-1309_0.949_8_B | |||||
RNASeq_FPKM (9) | |||||
Last_reviewed | 31 Aug 2016 10:21:23 | WBPerson4025 | |||
Remark | [gffnote] orthologous to Y50E8A.4 by best mutual match (eval=0) ; Ortholog Y50E8A.4 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP01249 ; Gene WBGene00027195 | ||||
[20080722 tb] Modified based on Jigsaw gene ContigchrV.briggsae.jigsaw.3055 | |||||
[160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG3279|c11_g1_i1-chrV-1b'. | Curator_confirmed | WBPerson4025 | |||
Method | curated |