WormBase Tree Display for CDS: CBG11932
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| CBG11932 | SMap | S_parent | Sequence | cb25.fpc2852 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 117 | ||
| 1095 | 1151 | ||||
| 1198 | 1284 | ||||
| 1331 | 1497 | ||||
| 3090 | 3309 | ||||
| 3582 | 3686 | ||||
| 3741 | 4672 | ||||
| 4717 | 4846 | ||||
| 4890 | 5666 | ||||
| 6309 | 6335 | ||||
| DB_info | Database | UniProt | UniProtAcc | A8XEM5 | |
| UniProtId | A8XEM5_CAEBR | ||||
| TrEMBL | UniProtAcc | A8XEM5 | |||
| UniProt_GCRP | UniProtAcc | A8XEM5 | |||
| TREEFAM | TREEFAM_ID | TF336753 | |||
| Protein_id | cb25.fpc2852 | CAP30993 | 1 | ||
| DB_remark | CBR-UNC-15 protein; contains similarity to Pfam domain PF01576 (Myosin tail); contains similarity to Interpro domain IPR002928 (Myosin tail) | ||||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00032961 | |||
| Corresponding_transcript | CBG11932.1 | ||||
| Corresponding_protein | CBP08991 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00032961_A | ||||
| GPL8303_CB6_WBGene00032961_B | |||||
| GPL8303_CB6_WBGene00032961_C | |||||
| GPL8303_CB6_WBGene00032961_D | |||||
| GPL8303_CB6_WBGene00032961_E | |||||
| GPL14143_CBG11932_593-652_0.722_148_C | |||||
| GPL14143_CBG11932_1140-1199_0.810_64_B | |||||
| GPL14143_CBG11932_1252-1311_0.809_65_A | |||||
| Matching_cDNA | briggsae_GG4325|c0_g1_i2 | Inferred_automatically | transcript_builder.pl | ||
| Microarray_results | GPL8303_CB6_WBGene00032961_A | ||||
| GPL8303_CB6_WBGene00032961_B | |||||
| GPL8303_CB6_WBGene00032961_C | |||||
| GPL8303_CB6_WBGene00032961_D | |||||
| GPL8303_CB6_WBGene00032961_E | |||||
| GPL14143_CBG11932_593-652_0.722_148_C | |||||
| GPL14143_CBG11932_1140-1199_0.810_64_B | |||||
| GPL14143_CBG11932_1252-1311_0.809_65_A | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:13 | WBPerson4025 | |||
| Remark | [gffnote] orthologous to F07A5.7 by best mutual match (eval=0) ; Ortholog F07A5.7 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP08991 ; Gene WBGene00032961 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrI_random.briggsae.jigsaw.196 | |||||
| [160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG4325|c0_g1_i3-chrI-2b.extended'. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
