WormBase Tree Display for CDS: CBG18291a
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| CBG18291a | SMap | S_parent | Sequence | cb25.fpc4079b | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 57 | ||
| 156 | 267 | ||||
| 311 | 688 | ||||
| 740 | 846 | ||||
| DB_info | Database | UniProt | UniProtAcc | Q17297 | |
| UniProtId | UN119_CAEBR | ||||
| DB_remark | CBR-UNC-119 protein; contains similarity to Pfam domain PF05351 (GMP-PDE, delta subunit); contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR037036 (GMP phosphodiesterase, delta subunit superfamily), IPR008015 (GMP phosphodiesterase, delta subunit) | ||||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Isoform | Curator_confirmed | WBPerson4025 | |||
| Visible | Gene | WBGene00037738 | |||
| Corresponding_transcript | CBG18291a.1 | ||||
| CBG18291a.2 | |||||
| CBG18291a.3 | |||||
| Corresponding_protein | CBP04305 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00037738_A | ||||
| GPL14143_CBG18291_113-172_0.927_14_B | |||||
| GPL14143_CBG18291_196-255_0.931_11_A | |||||
| GPL14143_CBG18291_467-526_0.929_12_C | |||||
| Matching_cDNA | briggsae_GG5146|c9_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
| briggsae_GG5146|c9_g4_i1 | Inferred_automatically | transcript_builder.pl | |||
| briggsae_GG5146|c9_g2_i1 | Inferred_automatically | transcript_builder.pl | |||
| briggsae_GG5146|c9_g3_i1 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL8303_CB6_WBGene00037738_A | ||||
| GPL14143_CBG18291_113-172_0.927_14_B | |||||
| GPL14143_CBG18291_196-255_0.931_11_A | |||||
| GPL14143_CBG18291_467-526_0.929_12_C | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 26 Sep 2016 17:29:29 | WBPerson4025 | |||
| Remark | [gffnote] orthologous to M142.1 by best mutual match (eval=1e-112) ; Ortholog M142.1 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP04305 ; Gene WBGene00037738 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrIII.briggsae.jigsaw.1677 | |||||
| [160826 gw3] The structure of this CDS has been reviewed by a curator and deemed satisfactory. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
