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WormBase Tree Display for CDS: CBG20003

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Name Class

CBG20003SMapS_parentSequencecb25.fpc4152
StructureSource_exons1305
12761743
19382263
26822842
34803868
39605189
52865525
1012910447
DB_infoDatabaseUniProtUniProtAccA8XWW8
UniProtIdA8XWW8_CAEBR
TrEMBLUniProtAccA8XWW8
UniProt_GCRPUniProtAccA8XWW8
TREEFAMTREEFAM_IDTF312903
Protein_idcb25.fpc4152CAP371372
DB_remarkCBR-LAM-1 protein; contains similarity to Pfam domains PF00053 (Laminin EGF domain), PF00055 (Laminin N-terminal (Domain VI)); contains similarity to Interpro domains IPR008211 (Laminin, N-terminal), IPR000742 (EGF-like domain), IPR002049 (Laminin-type EGF domain), IPR008979 (Galactose-binding-like domain superfamily), IPR038684 ()
OriginFrom_laboratoryCB
SpeciesCaenorhabditis briggsae
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00039108
Corresponding_transcriptCBG20003.1
Corresponding_proteinCBP48822
Corresponding_oligo_setGPL8303_CB6_WBGene00039095_A
GPL8303_CB6_WBGene00039108_A
GPL14143_CBG19981_361-420_0.946_6_C
GPL14143_CBG19981_489-548_0.950_4_B
GPL14143_CBG19981_595-654_0.970_1_A
GPL14143_CBG20003_3009-3068_0.922_15_B
GPL14143_CBG20003_3013-3072_0.918_17_C
GPL14143_CBG20003_3017-3076_0.929_10_A
Matching_cDNAbriggsae_GG7383|c1_g1_i1Inferred_automaticallytranscript_builder.pl
briggsae_GG7383|c1_g2_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL8303_CB6_WBGene00039095_A
GPL8303_CB6_WBGene00039108_A
GPL14143_CBG19981_361-420_0.946_6_C
GPL14143_CBG19981_489-548_0.950_4_B
GPL14143_CBG19981_595-654_0.970_1_A
GPL14143_CBG20003_3009-3068_0.922_15_B
GPL14143_CBG20003_3013-3072_0.918_17_C
GPL14143_CBG20003_3017-3076_0.929_10_A
RNASeq_FPKMWBls:000000219.1666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.65494From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
5.98807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
8.45201From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
WBls:000000319.687From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
24.3956From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
24.414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
WBls:000000464.2936From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
64.8943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
65.9613From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
67.195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
87.1757From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:000002411.1187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
13.2753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
13.9483From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
16.6648From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
17.5104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
18.3303From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
26.8157From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
5.92202From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
7.53394From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
7.9285From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
WBls:000002714.6466From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
22.8962From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
29.4158From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.32697From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
WBls:000003529.0429From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.9576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
22.3679From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
22.8047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
9.96645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004111.3735From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
12.3126From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
12.5723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
12.6461From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
4.44377From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
7.96118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
WBls:000006313.1021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
13.3807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
14.8659From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
15.2074From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
18.5373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
7.7314From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
Last_reviewed09 May 2018 14:04:37WBPerson4025
Remark[gffnote] orthologous to W03F8.5 by best match + synteny (eval=0) ; Ortholog W03F8.5 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP19744 ; Gene WBGene00039108
[20080722 tb] Modified based on Jigsaw gene ContigchrIV.briggsae.jigsaw.1757
[180509 gw3] This CDS has been updated based on the RNAseq data.Curator_confirmedWBPerson4025
From_analysisRNASeq
Methodcurated