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WormBase Tree Display for CDS: CBN05678

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Name Class

CBN05678SMapS_parentSequenceCbre_Contig340
StructureSource_exons1112
159451
12191389
15171676
17931884
DB_infoDB_remarkcontains similarity to Pfam domain PF04729 (ASF1 like histone chaperone); contains similarity to Interpro domains IPR006818 (Histone chaperone ASF1-like), IPR036747 (Histone chaperone ASF1-like superfamily), IPR017282 (Histone deposition protein Asf1)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00144403
Corresponding_transcriptCBN05678.1
Corresponding_proteinCN11396
Corresponding_oligo_setGPL14142_CBN05678_205-264_0.535_93_B
GPL14142_CBN05678_305-364_0.934_6_A
GPL14142_CBN05678_34-93_0.900_21_C
Matching_cDNAEU677741Inferred_automaticallytranscript_builder.pl
FF091103Inferred_automaticallytranscript_builder.pl
FF095951Inferred_automaticallytranscript_builder.pl
FF100162Inferred_automaticallytranscript_builder.pl
FF100764Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN05678_34-93_0.900_21_C
GPL14142_CBN05678_205-264_0.535_93_B
GPL14142_CBN05678_305-364_0.934_6_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
10.3477From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
10.6646From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
12.5309From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
12.6876From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
14.7092From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
26.4645From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
43.2025From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
9.34724From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
101.503From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
10.7583From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
15.594From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
20.2122From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
3.9143From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
8.27924From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003819.2779From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
23.2222From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig430.brenneri.jigsaw.18.mRNA18
Methodcurated