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WormBase Tree Display for CDS: CBN06354

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Name Class

CBN06354SMapS_parentSequenceCbre_Contig60
StructureSource_exons (37)
DB_infoDatabaseTREEFAMTREEFAM_IDTF326548
DB_remarkCBN-UNC-52 protein; contains similarity to Pfam domains PF00052 (Laminin B (Domain IV)), PF00053 (Laminin EGF domain), PF00057 (Low-density lipoprotein receptor domain class A), PF02210 (Laminin G domain), PF07679 (Immunoglobulin I-set domain), PF13895 (Immunoglobulin domain), PF13927 (Immunoglobulin domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR036055 (LDL receptor-like superfamily), IPR000034 (Laminin IV), IPR000742 (EGF-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily), IPR013098 (Immunoglobulin I-set), IPR001791 (Laminin G domain), IPR013783 (Immunoglobulin-like fold), IPR002049 (Laminin-type EGF domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR007110 (Immunoglobulin-like domain), IPR003599 (Immunoglobulin subtype), IPR001881 (EGF-like calcium-binding domain), IPR009030 (Growth factor receptor cysteine-rich domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00145079
Corresponding_transcriptCBN06354.1
Corresponding_proteinCN37966
Corresponding_oligo_setGPL14142_CBN15093_2884-2943_0.891_9_A
Matching_cDNAFF095466Inferred_automaticallytranscript_builder.pl
FF100780Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN15093_2884-2943_0.891_9_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
15.2564From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
16.5187From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
16.8323From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
19.0571From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
19.4026From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
19.4658From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
20.8086From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
29.1178From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
9.02344From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
31.823From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
32.9749From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
34.1042From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
42.2612From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
44.0222From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003851.9635From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
52.7929From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
RemarkContig353.brenneri.jigsaw.9.mRNA9
Methodcurated