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WormBase Tree Display for CDS: CBN07293

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Name Class

CBN07293SMapS_parentSequenceCbre_Contig33
StructureSource_exons (12)
DB_infoDatabaseTREEFAMTREEFAM_IDTF313446
DB_remarkCBN-UNC-70 protein; contains similarity to Pfam domains PF00307 (Calponin homology (CH) domain), PF00435 (Spectrin repeat), PF15410 (Pleckstrin homology domain); contains similarity to Interpro domains IPR002017 (Spectrin repeat), IPR036872 (CH domain superfamily), IPR001849 (Pleckstrin homology domain), IPR016343 (Spectrin, beta subunit), IPR041681 (Pleckstrin homology domain 9), IPR001605 (Pleckstrin homology domain, spectrin-type), IPR018159 (Spectrin/alpha-actinin), IPR011993 (PH-like domain superfamily), IPR001715 (Calponin homology domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00146018
Corresponding_transcriptCBN07293.1
Corresponding_proteinCN07064
Corresponding_oligo_setGPL14142_CBN07293_5864-5923_0.868_47_A
GPL14142_CBN07293_6088-6147_0.890_33_B
GPL14142_CBN07293_6170-6229_0.875_42_C
Microarray_resultsGPL14142_CBN07293_5864-5923_0.868_47_A
GPL14142_CBN07293_6088-6147_0.890_33_B
GPL14142_CBN07293_6170-6229_0.875_42_C
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
10.7325From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
10.8332From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
12.2757From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
14.9137From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
14.9441From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
15.3882From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
17.5075From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
20.1686From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
23.2052From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
101.266From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
103.878From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
118.204From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
62.9163From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
87.7138From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:000003813.1717From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
13.6817From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig442.brenneri.jigsaw.8.mRNA8
Methodcurated