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WormBase Tree Display for CDS: CBN19926

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Name Class

CBN19926SMapS_parentSequenceCbre_Contig180
StructureSource_exons183
430494
18902157
22653442
36054005
42294393
DB_infoDatabaseTREEFAMTREEFAM_IDTF314677
DB_remarkCBN-UNC-112 protein; contains similarity to Pfam domains PF00169 (PH domain), PF00373 (FERM central domain), PF18124 (Kindlin-2 N-terminal domain); contains similarity to Interpro domains IPR040790 (Kindlin-2, N-terminal), IPR019748 (FERM central domain), IPR001849 (Pleckstrin homology domain), IPR037843 (Kindlin/fermitin), IPR011993 (PH-like domain superfamily), IPR035963 (FERM superfamily, second domain), IPR019749 (Band 4.1 domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00158651
Corresponding_transcriptCBN19926.1
Corresponding_proteinCN00969
Corresponding_oligo_setGPL14142_CBN19926_1489-1548_0.904_4_C
GPL14142_CBN19926_1805-1864_0.908_3_A
GPL14142_CBN19926_1841-1900_0.842_51_B
Microarray_resultsGPL14142_CBN19926_1489-1548_0.904_4_C
GPL14142_CBN19926_1805-1864_0.908_3_A
GPL14142_CBN19926_1841-1900_0.842_51_B
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
10.1561From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
12.0549From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
12.5754From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
14.4602From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
6.7481From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
6.9514From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
7.13026From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
8.72298From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
29.5439From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
65.4253From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
73.3826From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
82.5462From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
87.6097From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
98.2332From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003861.4555From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
64.0166From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig420.brenneri.jigsaw.12.mRNA12
Methodcurated