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WormBase Tree Display for CDS: CBN24368

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Name Class

CBN24368SMapS_parentSequenceCbre_Contig33
StructureSource_exons154
274338
388749
798910
11211223
12731366
14684659
47795012
53505466
57405880
59356056
61776248
64366521
65666858
69017319
76707900
79518110
816110171
1021610339
1042610576
1063410830
1092611080
1112611683
1173311951
1199712391
1244312769
1281513025
1322513366
1341213520
1356914026
1407414234
1427914566
1464014681
1492115006
1505315347
1544915496
1575615868
1597716157
1658217040
1708717200
1741617466
1754517595
1773517855
1790518122
1816619091
1913719436
1948319837
1988619997
2004421000
2131821483
2153221685
DB_infoDatabaseTREEFAMTREEFAM_IDTF315244
DB_remarkCBN-UNC-68 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF00622 (SPRY domain), PF01365 (RIH domain), PF02026 (RyR domain), PF02815 (MIR domain), PF06459 (Ryanodine Receptor TM 4-6), PF08454 (RyR and IP3R Homology associated), PF08709 (Inositol 1,4,5-trisphosphate/ryanodine receptor), PF13499 (EF-hand domain pair); contains similarity to Interpro domains IPR014821 (Inositol 1,4,5-trisphosphate/ryanodine receptor), IPR011992 (EF-hand domain pair), IPR002048 (EF-hand domain), IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily), IPR035910 (RyR/IP3 receptor binding core, RIH domain superfamily), IPR036300 (Mir domain superfamily), IPR009460 (Ryanodine Receptor TM 4-6), IPR005821 (Ion transport domain), IPR015925 (Ryanodine/Inositol 1,4,5-trisphosphate receptor), IPR003032 (Ryanodine receptor Ryr), IPR013662 (RyR/IP3R Homology associated domain), IPR000699 (RIH domain), IPR003877 (SPRY domain), IPR013333 (Ryanodine receptor), IPR016093 (MIR motif)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00163093
Corresponding_transcriptCBN24368.1
Corresponding_proteinCN37795
Corresponding_oligo_setGPL14142_CBN24368_15657-15716_0.932_10_B
GPL14142_CBN24368_15730-15789_0.950_4_C
GPL14142_CBN24368_15797-15856_0.968_1_A
GPL14142_CBN31926_3519-3578_0.904_5_B
GPL14142_CBN31926_3529-3588_0.904_4_A
Microarray_resultsGPL14142_CBN24368_15657-15716_0.932_10_B
GPL14142_CBN24368_15730-15789_0.950_4_C
GPL14142_CBN24368_15797-15856_0.968_1_A
GPL14142_CBN31926_3519-3578_0.904_5_B
GPL14142_CBN31926_3529-3588_0.904_4_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
3.03448From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
6.27072From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
6.33522From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
6.43439From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
6.49515From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
6.74348From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
8.20043From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
8.39192From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
2.89405From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
19.1547From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
24.2565From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
28.4481From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
32.4589From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
32.5008From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:00000387.28533From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
8.12674From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig442.brenneri.jigsaw.11.mRNA11
Methodcurated