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WormBase Tree Display for CDS: CBN31384

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Name Class

CBN31384SMapS_parentSequenceCbre_Contig18
StructureSource_exons133
440513
49769056
93459734
997910194
DB_infoDatabaseTREEFAMTREEFAM_IDTF314677
DB_remarkCBN-TLN-1 protein; contains similarity to Pfam domains PF01608 (I/LWEQ domain), PF08913 (Vinculin Binding Site); contains similarity to Interpro domains IPR002558 (I/LWEQ domain), IPR036723 (Alpha-catenin/vinculin-like superfamily), IPR035964 (I/LWEQ domain superfamily), IPR015009 (Vinculin-binding site-containing domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00193349
Corresponding_transcriptCBN31384.1
Corresponding_proteinCN36012
Corresponding_oligo_setGPL14142_CBN31384_4227-4286_0.928_16_C
GPL14142_CBN31384_4613-4672_0.945_7_B
GPL14142_CBN31384_4674-4733_0.960_1_A
Matching_cDNAFD512245Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN31384_4227-4286_0.928_16_C
GPL14142_CBN31384_4613-4672_0.945_7_B
GPL14142_CBN31384_4674-4733_0.960_1_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
1.52709From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
16.0531From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
3.16221From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
3.25934From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
3.92635From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
4.14511From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
4.72591From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
5.51299From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
24.6176From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
28.7559From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
41.9886From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
43.1251From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
48.8702From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
51.8218From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003833.1593From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
33.2616From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
Remark[20090520 js] Original name Cbre_Contig18.brenneri.jigsaw.158
Methodcurated