WormBase Tree Display for Operon: CEOP3868
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| CEOP3868 | SMap | S_parent | Canonical_parent | CHROMOSOME_III | |
|---|---|---|---|---|---|
| Species | Caenorhabditis elegans | ||||
| Contains_gene | WBGene00002218 | SL2 | From_analysis | RNASeq_Hillier_elegans | |
| WBGene00020092 | SL2 | Person_evidence | WBPerson71 | ||
| Curator_confirmed | WBPerson1983 | ||||
| From_analysis | RNASeq_Hillier_elegans | ||||
| Description | C. elegans Alternative Operon - These exist as a single gene locus where SL2 Trans-splicing occurs at downstream exons in the gene. | ||||
| Method | operon | ||||
| History | Merged_into | CEOP3256 | |||
| Remark | [090812 pad] New operon defined by SL1 and SL2 data as identified by RNAseq deep sequencing data produced by Hillier L. et al. | Person_evidence | WBPerson71 | ||
| From_analysis | modENCODE_Waterston_RNAseq | ||||
| [110322 pad] This operon has been re-assesed based on the modENCODE Waterston RNASeq data. The number of SL2 reads for each downstream gene in these operons does not achieve the 5% cutoff so has been removed from the operon set. | Person_evidence | WBPerson71 | |||
| Curator_confirmed | WBPerson1983 | ||||
| From_analysis | RNASeq_Hillier_elegans | ||||
| [110401 pad] Pcf-11 is an alternative operon so exists as a 1 gene operon. Removed WBGene00044648 R144.13 based on SL2 read data from RNASeq deep sequencing and added this gene to CEOP3256. | Person_evidence | WBPerson71 | |||
| Curator_confirmed | WBPerson1983 | ||||
| From_analysis | RNASeq_Hillier_elegans | ||||
| [111017 pad] Also has evidence that it exists as a 2 gene operon. | Person_evidence | WBPerson71 | |||
| Curator_confirmed | WBPerson1983 | ||||
| From_analysis | RNASeq_Hillier_elegans |
