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WormBase Tree Display for CDS: CJA01422

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Name Class

CJA01422EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig4283
StructureSource_exons149
15381675
17201862
DB_infoDatabaseTREEFAMTREEFAM_IDTF323340
DB_remarkCJP-UNC-69 protein; contains similarity to Pfam domain PF10224 (Short coiled-coil protein); contains similarity to Interpro domain IPR019357 (Short coiled-coil protein)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00120626
Corresponding_transcriptCJA01422.1
Corresponding_proteinJA14914
Corresponding_oligo_setGPL14145_CJA01422_63-122_0.902_3_C
GPL14145_CJA01422_130-189_0.891_4_B
GPL14145_CJA01422_232-291_0.913_1_A
Matching_cDNAFF115659Inferred_automaticallytranscript_builder.pl
japonica_GG2579|c0_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG4182|c3_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA01422_130-189_0.891_4_B
GPL14145_CJA01422_232-291_0.913_1_A
GPL14145_CJA01422_63-122_0.902_3_C
RNASeq_FPKMWBls:000000492.2975From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002721.8084From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003818.3401From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
23.5411From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.9082From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
11.7319From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
16.3099From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
24.5849From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
32.9288From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
33.102From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
34.085From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
8.13277From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig4283.g3095.t1[100726 mh6]
Methodcurated