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WormBase Tree Display for CDS: CJA01711

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Name Class

CJA01711EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig4283
StructureSource_exons1146
188369
23752695
36003871
DB_infoDatabaseTREEFAMTREEFAM_IDTF105624
DB_remarkCJP-UNC-50 protein; contains similarity to Pfam domain PF05216 (UNC-50 family); contains similarity to Interpro domain IPR007881 (UNC-50)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00120915
Corresponding_transcriptCJA01711.1
Corresponding_proteinJA13905
Corresponding_oligo_setGPL14145_CJA01711_252-311_0.863_1_A
GPL14145_CJA01711_768-827_0.761_17_B
GPL14145_CJA01711_871-930_0.793_12_C
Matching_cDNAFF119548Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA01711_252-311_0.863_1_A
GPL14145_CJA01711_768-827_0.761_17_B
GPL14145_CJA01711_871-930_0.793_12_C
RNASeq_FPKMWBls:000000468.7958From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002743.1671From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003831.9209From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
41.2384From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004162.6891From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
63.9894From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
66.7627From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
67.303From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
71.1841From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
76.2629From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
80.8373From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
82.0029From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig4283.g3094.t1[100726 mh6]
Methodcurated