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WormBase Tree Display for CDS: CJA03598a

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Name Class

CJA03598aSMapS_parentSequenceCjap.Contig18213
StructureSource_exons (20)
DB_infoDB_remarkCJP-UNC-2 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF08763 (Voltage gated calcium channel IQ domain), PF16905 (Voltage-dependent L-type calcium channel, IQ-associated); contains similarity to Interpro domains IPR031649 (Voltage-dependent L-type calcium channel, IQ-associated domain), IPR014873 (Voltage-dependent calcium channel, alpha-1 subunit, IQ domain), IPR005821 (Ion transport domain), IPR005447 (Voltage-dependent calcium channel, N-type, alpha-1 subunit), IPR027359 (Voltage-dependent channel domain superfamily), IPR002077 (Voltage-dependent calcium channel, alpha-1 subunit)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
Isoform
VisibleGeneWBGene00122802
Corresponding_transcriptCJA03598a.1
Corresponding_proteinJA41059
Corresponding_oligo_setGPL14145_CJA03598_4103-4162_0.620_714_B
GPL14145_CJA03598_4372-4431_0.852_78_A
GPL14145_CJA03598_5633-5692_0.957_1_C
Matching_cDNAjaponica_GG16861|c3_g1_i3Inferred_automaticallytranscript_builder.pl
japonica_GG16861|c3_g2_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA03598_4103-4162_0.620_714_B
GPL14145_CJA03598_4372-4431_0.852_78_A
GPL14145_CJA03598_5633-5692_0.957_1_C
RNASeq_FPKMWBls:00000049.42263From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002711.4206From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000386.26494From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
6.48229From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.337776From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.519036From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.552415From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.587104From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.651516From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.919314From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
1.0956From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
1.3142From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig18213.g28999.t1[100726 mh6]
Methodcurated