WormBase Tree Display for CDS: CJA03598b
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CJA03598b | SMap | S_parent | Sequence | Cjap.Contig18213 | |
---|---|---|---|---|---|
Structure | Source_exons (19) | ||||
DB_info | DB_remark | CJP-UNC-2 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF08763 (Voltage gated calcium channel IQ domain), PF16905 (Voltage-dependent L-type calcium channel, IQ-associated); contains similarity to Interpro domains IPR031649 (Voltage-dependent L-type calcium channel, IQ-associated domain), IPR014873 (Voltage-dependent calcium channel, alpha-1 subunit, IQ domain), IPR005821 (Ion transport domain), IPR005447 (Voltage-dependent calcium channel, N-type, alpha-1 subunit), IPR027359 (Voltage-dependent channel domain superfamily), IPR002077 (Voltage-dependent calcium channel, alpha-1 subunit) | |||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis japonica | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | |||||
Visible | Gene | WBGene00122802 | |||
Corresponding_transcript | CJA03598b.1 | ||||
Corresponding_protein | JA58532 | ||||
Corresponding_oligo_set | GPL14145_CJA03598_4103-4162_0.620_714_B | ||||
GPL14145_CJA03598_4372-4431_0.852_78_A | |||||
GPL14145_CJA03598_5633-5692_0.957_1_C | |||||
Matching_cDNA | japonica_GG16861|c3_g1_i2 | Inferred_automatically | transcript_builder.pl | ||
Microarray_results | GPL14145_CJA03598_4103-4162_0.620_714_B | ||||
GPL14145_CJA03598_4372-4431_0.852_78_A | |||||
GPL14145_CJA03598_5633-5692_0.957_1_C | |||||
RNASeq_FPKM (4) | |||||
Remark | based on Augustus prediction Cjap.Contig18213.g28999.t2[100726 mh6] | ||||
Method | curated |