WormBase Tree Display for CDS: CJA03858
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CJA03858 | Evidence | Inferred_automatically | make_isoforms.pl | ||
---|---|---|---|---|---|
SMap | S_parent | Sequence | Cjap.Contig18194 | ||
Structure | Source_exons | 1 | 73 | ||
136 | 614 | ||||
983 | 1475 | ||||
1523 | 2206 | ||||
2260 | 2366 | ||||
DB_info | Database | TREEFAM | TREEFAM_ID | TF300821 | |
DB_remark | CJP-UNC-78 protein; contains similarity to Pfam domain PF00400 (WD domain, G-beta repeat); contains similarity to Interpro domains IPR036322 (WD40-repeat-containing domain superfamily), IPR001680 (WD40 repeat), IPR020472 (G-protein beta WD-40 repeat), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis japonica | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Visible | Gene | WBGene00123062 | |||
Corresponding_transcript | CJA03858.1 | ||||
Corresponding_protein | JA44368 | ||||
Corresponding_oligo_set | GPL14145_CJA03858_1278-1337_0.933_3_C | ||||
GPL14145_CJA03858_1543-1602_0.939_2_B | |||||
GPL14145_CJA03858_1669-1728_0.794_101_A | |||||
Matching_cDNA | FF111381 | Inferred_automatically | transcript_builder.pl | ||
FF111734 | Inferred_automatically | transcript_builder.pl | |||
FF115867 | Inferred_automatically | transcript_builder.pl | |||
FF129976 | Inferred_automatically | transcript_builder.pl | |||
FF135602 | Inferred_automatically | transcript_builder.pl | |||
FF135678 | Inferred_automatically | transcript_builder.pl | |||
FF137199 | Inferred_automatically | transcript_builder.pl | |||
FF137809 | Inferred_automatically | transcript_builder.pl | |||
japonica_GG12703|c3_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
japonica_GG12703|c3_g2_i1 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14145_CJA03858_1278-1337_0.933_3_C | ||||
GPL14145_CJA03858_1543-1602_0.939_2_B | |||||
GPL14145_CJA03858_1669-1728_0.794_101_A | |||||
RNASeq_FPKM (4) | |||||
Remark | based on Augustus prediction Cjap.Contig18194.g27676.t1[100726 mh6] | ||||
Method | curated |