WormBase Tree Display for CDS: CJA07019b

CJA07019b Evidence: Inferred_automatically: make_isoforms.pl
  SMap: S_parent: Sequence: Cjap.Contig16626
  Structure: Source_exons: 1 46
      979 1142
      1206 1583
      2484 3453
      4744 5112
      5516 5605
      7004 7104
      7281 7763
  DB_info: Database: TREEFAM TREEFAM_ID TF321506
    DB_remark: CJP-UNC-40 protein; contains similarity to Pfam domain PF00041 (Fibronectin type III domain); contains similarity to Interpro domains IPR003961 (Fibronectin type III), IPR013783 (Immunoglobulin-like fold), IPR036116 (Fibronectin type III superfamily)
  Origin: From_laboratory: RW
    Species: Caenorhabditis japonica
  Properties: Coding: CDS
      Prediction_status: Partially_confirmed
    Isoform
  Visible: Gene: WBGene00126223
    Corresponding_transcript: CJA07019b.1
    Corresponding_protein: JA57681
    Corresponding_oligo_set: GPL14145_CJA07019_482-541_0.371_421_B
      GPL14145_CJA07019_1470-1529_0.717_51_A
      GPL14145_CJA07019_2602-2661_0.452_216_C
    Microarray_results: GPL14145_CJA07019_1470-1529_0.717_51_A
      GPL14145_CJA07019_2602-2661_0.452_216_C
      GPL14145_CJA07019_482-541_0.371_421_B
    RNASeq_FPKM: WBls:0000004 0.001707 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 0.001717 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 0.002322 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        0.007957 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 0.001781 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        0.00182 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        29.0552 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        31.2719 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        37.4286 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        7.20275 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        7.39962 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        9.108 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
    Remark: based on Augustus prediction Cjap.Contig16626.g12176.t2[100726 mh6]
  Method: curated