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WormBase Tree Display for CDS: CJA07297

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Name Class

CJA07297EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18095
StructureSource_exons190
376640
699751
26393376
34413687
37534077
43414905
71357370
74247496
DB_infoDatabaseTREEFAMTREEFAM_IDTF324551
DB_remarkCJP-UNC-51 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF12063 (Atg1-like, MIT domain 1); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR022708 (Serine/threonine-protein kinase Atg1-like, tMIT domain), IPR000719 (Protein kinase domain), IPR017184 (Serine/threonine-protein kinase Unc-51)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00126501
Corresponding_transcriptCJA07297.1
Corresponding_proteinJA48409
Corresponding_oligo_setGPL14145_CJA07297_8-67_0.789_131_B
GPL14145_CJA07297_1216-1275_0.857_51_C
GPL14145_CJA07297_2557-2616_0.957_1_A
Matching_cDNAjaponica_GG9199|c1_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG9199|c1_g2_i1Inferred_automaticallytranscript_builder.pl
japonica_GG9199|c1_g3_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA07297_1216-1275_0.857_51_C
GPL14145_CJA07297_2557-2616_0.957_1_A
GPL14145_CJA07297_8-67_0.789_131_B
RNASeq_FPKMWBls:0000004135.674From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002783.3376From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003843.6281From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
46.9636From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004117.0787From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
18.7308From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
20.2288From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
21.8915From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
38.1498From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
42.1313From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
45.4247From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
47.5386From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig18095.g24698.t1[100726 mh6]
Methodcurated