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WormBase Tree Display for CDS: CJA07521a

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Name Class

CJA07521aSMapS_parentSequenceCjap.Contig16513
StructureSource_exons (15)
DB_infoDB_remarkCJP-UNC-89 protein; contains similarity to Pfam domains PF05177 (RCSD region), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR013098 (Immunoglobulin I-set), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR013783 (Immunoglobulin-like fold), IPR013106 (Immunoglobulin V-set domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR009057 (Homeobox-like domain superfamily), IPR007850 (RCSD)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00126725
Corresponding_transcriptCJA07521a.1
Corresponding_proteinJA47391
Corresponding_oligo_setGPL14145_CJA07521_18320-18379_0.845_32_A
GPL14145_CJA07521_18779-18838_0.928_1_B
GPL14145_CJA07521_18783-18842_0.919_2_C
Microarray_resultsGPL14145_CJA07521_18320-18379_0.845_32_A
GPL14145_CJA07521_18779-18838_0.928_1_B
GPL14145_CJA07521_18783-18842_0.919_2_C
RNASeq_FPKMWBls:00000047.39549From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000277.76161From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003812.6237From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
13.9835From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.111206From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.147866From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.20606From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.238248From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.516402From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
1.14631From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
4.74998From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
6.04396From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig16513.g11796.t2[100726 mh6]
Methodcurated