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WormBase Tree Display for CDS: CJA07720

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Name Class

CJA07720SMapS_parentSequenceCjap.Contig7982
StructureSource_exons1198
81958248
83669400
94489552
DB_infoDatabaseTREEFAMTREEFAM_IDTF314420
DB_remarkCJP-UNC-132 protein; contains similarity to Pfam domain PF13521 (AAA domain); contains similarity to Interpro domains IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR038727 (NadR/Ttd14, AAA domain), IPR033469 (CYTH-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00126924
Corresponding_transcriptCJA07720.1
Corresponding_proteinJA45060
Corresponding_oligo_setGPL14145_CJA07720_1025-1084_0.851_53_C
GPL14145_CJA07720_1069-1128_0.941_2_B
GPL14145_CJA07720_1259-1318_0.942_1_A
Matching_cDNAjaponica_GG5155|c3_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA07720_1025-1084_0.851_53_C
GPL14145_CJA07720_1069-1128_0.941_2_B
GPL14145_CJA07720_1259-1318_0.942_1_A
RNASeq_FPKMWBls:000000414.545From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002718.4398From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003821.721From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
24.1722From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004118.0433From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
21.8583From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
32.2199From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
33.3887From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
37.9957From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
47.4902From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
47.9956From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
51.0822From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig7982.g5647.t1[100726 mh6]
Methodcurated