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WormBase Tree Display for CDS: CJA09335a

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Name Class

CJA09335aSMapS_parentSequenceCjap.Contig16461
StructureSource_exons11159
14611589
27002900
DB_infoDB_remarkCJP-UNC-33 protein; contains similarity to Pfam domain PF01979 (Amidohydrolase family); contains similarity to Interpro domains IPR032466 (Metal-dependent hydrolase), IPR011059 (Metal-dependent hydrolase, composite domain superfamily), IPR006680 (Amidohydrolase-related)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
Isoform
Start_not_found2
VisibleGeneWBGene00128539
Corresponding_transcriptCJA09335a.1
Corresponding_proteinJA56337
Corresponding_oligo_setGPL14145_CJA09335_415-474_0.836_21_C
GPL14145_CJA09335_1104-1163_0.722_86_A
GPL14145_CJA09335_1501-1560_0.908_2_B
Matching_cDNAjaponica_GG5579|c1_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG15652|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA09335_1104-1163_0.722_86_A
GPL14145_CJA09335_1501-1560_0.908_2_B
GPL14145_CJA09335_415-474_0.836_21_C
RNASeq_FPKMWBls:000000445.7005From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002716.6367From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000381.6062From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
8.86351From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004111.0911From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
11.7985From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
15.8029From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
25.8488From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
26.4723From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
27.0132From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
7.8877From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
8.98192From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig16461.g11603.t2[100726 mh6]
Methodcurated