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WormBase Tree Display for CDS: CJA09911b

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Name Class

CJA09911bSMapS_parentSequenceCjap.Contig18211
StructureSource_exons1117
175219
317638
17232616
28112944
31963963
56386699
74857511
DB_infoDB_remarkCJP-UNC-41 protein; contains similarity to Pfam domain PF00928 (Adaptor complexes medium subunit family); contains similarity to Interpro domains IPR028565 (Mu homology domain), IPR036168 (AP-2 complex subunit mu, C-terminal superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00129115
Corresponding_transcriptCJA09911b.1
Corresponding_proteinJA63490
Corresponding_oligo_setGPL14145_CJA09911_3739-3798_0.844_72_B
GPL14145_CJA09911_3904-3963_0.933_13_A
GPL14145_CJA09911_4139-4198_0.970_1_C
Microarray_resultsGPL14145_CJA09911_3739-3798_0.844_72_B
GPL14145_CJA09911_3904-3963_0.933_13_A
GPL14145_CJA09911_4139-4198_0.970_1_C
RNASeq_FPKMWBls:000000425.8276From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002718.9047From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000388.41286From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
9.47142From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.000915From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.003089From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.407815From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1.1047From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
1.25577From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
1.80806From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
1.87658From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
3.26317From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig18211.g28773.t1[100726 mh6]
Methodcurated