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WormBase Tree Display for CDS: CJA10704

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Name Class

CJA10704SMapS_parentSequenceCjap.Contig17796
StructureSource_exons1285
335688
7531276
50336605
74087710
81538508
89439075
912411120
1118311364
1148611568
DB_infoDatabaseTREEFAMTREEFAM_IDTF351263
DB_remarkCJP-UNC-44 protein; contains similarity to Pfam domains PF00023 (Ankyrin repeat), PF00531 (Death domain), PF00791 (ZU5 domain), PF12796 (Ankyrin repeats (3 copies)), PF13637 (Ankyrin repeats (many copies)), PF13857 (Ankyrin repeats (many copies)), PF17809 (UPA domain); contains similarity to Interpro domains IPR011029 (Death-like domain superfamily), IPR000906 (ZU5 domain), IPR002110 (Ankyrin repeat), IPR036770 (Ankyrin repeat-containing domain superfamily), IPR040745 (Ankyrin, UPA domain), IPR000488 (Death domain), IPR020683 (Domain of unknown function DUF3447)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00129908
Corresponding_transcriptCJA10704.1
Corresponding_proteinJA55044
Corresponding_oligo_setGPL14145_CJA10704_3565-3624_0.934_3_C
GPL14145_CJA10704_3931-3990_0.961_2_B
GPL14145_CJA10704_3937-3996_0.968_1_A
GPL14145_CJA21465_608-667_0.929_1_A
Microarray_resultsGPL14145_CJA10704_3565-3624_0.934_3_C
GPL14145_CJA10704_3931-3990_0.961_2_B
GPL14145_CJA10704_3937-3996_0.968_1_A
GPL14145_CJA21465_608-667_0.929_1_A
RNASeq_FPKMWBls:0000004151.872From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002791.2137From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003876.2685From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
76.8918From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004111.6972From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
12.9579From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
15.1233From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
26.5085From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
27.4145From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
30.0906From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
32.3123From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
34.3102From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig17796.g20202.t1[100726 mh6]
Methodcurated