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WormBase Tree Display for CDS: CJA14444

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Name Class

CJA14444EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig3102
StructureSource_exons1870
9251910
19702237
DB_infoDatabaseTREEFAMTREEFAM_IDTF300686
DB_remarkCJP-HSP-90 protein; contains similarity to Pfam domains PF00183 (Hsp90 protein), PF02518 (Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase); contains similarity to Interpro domains IPR001404 (Heat shock protein Hsp90 family), IPR020575 (Heat shock protein Hsp90, N-terminal), IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR036890 (Histidine kinase/HSP90-like ATPase superfamily), IPR003594 (Histidine kinase/HSP90-like ATPase), IPR037196 (HSP90, C-terminal domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00133648
Corresponding_transcriptCJA14444.1
Corresponding_proteinJA56130
Corresponding_oligo_setGPL14145_CJA14444_394-453_0.818_24_B
GPL14145_CJA14444_699-758_0.742_49_C
GPL14145_CJA14444_890-949_0.783_32_A
Matching_cDNA (31)
Microarray_resultsGPL14145_CJA14444_394-453_0.818_24_B
GPL14145_CJA14444_699-758_0.742_49_C
GPL14145_CJA14444_890-949_0.783_32_A
RNASeq_FPKMWBls:0000004484.355From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000271838.33From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:0000038918.221From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
947.527From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000411434.1From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
1445.19From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
1616.82From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
1693.62From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1724.77From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1781.74From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2078.81From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
2639.68From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig3102.g2271.t1[100726 mh6]
[150407 mh6] most likely incomplete at the N-terminusCurator_confirmedWBPerson4055
Methodcurated