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WormBase Tree Display for CDS: CJA14922

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Name Class

CJA14922EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18023
StructureSource_exons195
145427
18772203
22682522
41904234
DB_infoDatabaseTREEFAMTREEFAM_IDTF314340
DB_remarkCJP-CEH-20 protein; contains similarity to Pfam domains PF00046 (Homeodomain), PF03792 (PBC domain); contains similarity to Interpro domains IPR005542 (PBX, PBC domain), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00134126
Corresponding_transcriptCJA14922.1
Corresponding_proteinJA02847
Corresponding_oligo_setGPL14145_CJA14922_271-330_0.855_27_A
GPL14145_CJA14922_425-484_0.903_6_C
GPL14145_CJA14922_599-658_0.916_4_B
Matching_cDNAFF114203Inferred_automaticallytranscript_builder.pl
japonica_GG16938|c1_g2_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA14922_271-330_0.855_27_A
GPL14145_CJA14922_425-484_0.903_6_C
GPL14145_CJA14922_599-658_0.916_4_B
RNASeq_FPKMWBls:000000495.012From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002736.8294From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003827.3836From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
32.965From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004110.5754From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
10.5812From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
11.9482From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
12.3828From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
12.4099From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
13.6805From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
7.4746From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
7.69634From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig18023.g23399.t1[100726 mh6]
Methodcurated