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WormBase Tree Display for CDS: CJA15042

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Name Class

CJA15042EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18059
StructureSource_exons1117
11201176
12241310
13641530
22442463
27132817
29504011
40594835
50625088
DB_infoDatabaseTREEFAMTREEFAM_IDTF336753
DB_remarkCJP-UNC-15 protein; contains similarity to Pfam domain PF01576 (Myosin tail); contains similarity to Interpro domain IPR002928 (Myosin tail)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00134246
Corresponding_transcriptCJA15042.1
Corresponding_proteinJA62669
Corresponding_oligo_setGPL14145_CJA15042_3029-3088_0.947_2_B
GPL14145_CJA15042_3069-3128_0.936_3_C
GPL14145_CJA15042_3076-3135_0.958_1_A
Matching_cDNAFF114663Inferred_automaticallytranscript_builder.pl
FF118337Inferred_automaticallytranscript_builder.pl
FF133406Inferred_automaticallytranscript_builder.pl
FF139072Inferred_automaticallytranscript_builder.pl
japonica_GG11361|c4_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA15042_3029-3088_0.947_2_B
GPL14145_CJA15042_3069-3128_0.936_3_C
GPL14145_CJA15042_3076-3135_0.958_1_A
RNASeq_FPKMWBls:0000004362.864From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:0000027748.378From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000381222.82From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
1307.16From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:0000041129.613From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
175.629From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
241.287From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
323.962From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
323.98From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
418.953From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
467.967From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
948.238From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig18059.g23981.t1[100726 mh6]
Methodcurated