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WormBase Tree Display for CDS: CJA16024

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Name Class

CJA16024EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18203
StructureSource_exons151
14231534
22322322
27782913
45454780
51085288
DB_infoDB_remarkCJP-UNC-42 protein; contains similarity to Pfam domain PF00046 (Homeodomain); contains similarity to Interpro domains IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00135228
Corresponding_transcriptCJA16024.1
Corresponding_proteinJA26103
Corresponding_oligo_setGPL14145_CJA16024_316-375_0.920_3_A
GPL14145_CJA16024_579-638_0.493_68_C
GPL14145_CJA16024_730-789_0.912_7_B
Microarray_resultsGPL14145_CJA16024_316-375_0.920_3_A
GPL14145_CJA16024_579-638_0.493_68_C
GPL14145_CJA16024_730-789_0.912_7_B
RNASeq_FPKMWBls:000000412.3447From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000275.2647From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000382.17008From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
2.73589From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.538279From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.910298From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1.1073From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
1.10775From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
1.1791From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
1.31974From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
1.49771From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1.78598From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig18203.g28250.t1[100726 mh6]
Methodcurated