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WormBase Tree Display for CDS: CJA18136a

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Name Class

CJA18136aSMapS_parentSequenceCjap.Contig17857
StructureSource_exons (17)
DB_infoDB_remarkCJP-UNC-104 protein; contains similarity to Pfam domains PF00169 (PH domain), PF00225 (Kinesin motor domain), PF12423 (Kinesin protein 1B), PF12473 (Kinesin protein); contains similarity to Interpro domains IPR008984 (SMAD/FHA domain superfamily), IPR022140 (Kinesin-like KIF1-type), IPR022164 (Kinesin-like), IPR001752 (Kinesin motor domain), IPR001849 (Pleckstrin homology domain), IPR011993 (PH-like domain superfamily), IPR036961 (Kinesin motor domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00137339
Corresponding_transcriptCJA18136a.1
Corresponding_proteinJA45838
Corresponding_oligo_setGPL14145_CJA18136_3485-3544_0.800_52_C
GPL14145_CJA18136_3630-3689_0.685_260_A
GPL14145_CJA18136_3687-3746_0.937_1_B
Matching_cDNAjaponica_GG5526|c0_g2_i2Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA18136_3485-3544_0.800_52_C
GPL14145_CJA18136_3630-3689_0.685_260_A
GPL14145_CJA18136_3687-3746_0.937_1_B
RNASeq_FPKMWBls:00000041e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000271e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000384e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
1e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.191704From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.212189From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.257195From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.332215From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
1e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
7.2e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
9.1e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
Remarkbased on Augustus prediction Cjap.Contig17857.g20950.t3[100726 mh6]
Methodcurated