Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA18345

expand all nodes | collapse all nodes | view schema

Name Class

CJA18345SMapS_parentSequenceCjap.Contig12575
StructureSource_exons1105
148276
332970
17012009
37213795
DB_infoDatabaseTREEFAMTREEFAM_IDTF314657
DB_remarkCJP-TTC-4 protein; contains similarity to Pfam domain PF18972 (Cns1/TTC4 Wheel domain); contains similarity to Interpro domain IPR011990 (Tetratricopeptide-like helical domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00137549
Corresponding_transcriptCJA18345.1
Corresponding_proteinJA09029
Corresponding_oligo_setGPL14145_CJA18345_17-76_0.797_118_A
GPL14145_CJA18345_117-176_0.784_137_B
GPL14145_CJA18345_1161-1220_0.887_36_C
Matching_cDNAFF115310Inferred_automaticallytranscript_builder.pl
FF120664Inferred_automaticallytranscript_builder.pl
japonica_GG18269|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA18345_1161-1220_0.887_36_C
GPL14145_CJA18345_117-176_0.784_137_B
GPL14145_CJA18345_17-76_0.797_118_A
RNASeq_FPKMWBls:000000423.531From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002722.5135From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003821.6811From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
24.1188From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.7153From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
13.3203From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
13.4747From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
13.618From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
39.5402From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
53.7567From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
61.4893From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
65.4894From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig12575.g8467.t1[100726 mh6]
Methodcurated