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WormBase Tree Display for CDS: CJA22978

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Name Class

CJA22978EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig8538
StructureSource_exons1189
9711177
DB_infoDB_remarkCJP-COF-2.2 protein; contains similarity to Pfam domain PF02191 (Olfactomedin-like domain); contains similarity to Interpro domain IPR003112 (Olfactomedin-like domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00178550
Corresponding_transcriptCJA22978.1
CJA22978.2
Corresponding_proteinJA46229
Corresponding_oligo_setGPL14145_CJA22978_351-410_0.907_12_C
GPL14145_CJA22978_452-511_0.964_2_B
GPL14145_CJA22978_547-606_0.974_1_A
Matching_cDNAjaponica_GG10856|c0_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG10856|c0_g1_i2Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA22978_351-410_0.907_12_C
GPL14145_CJA22978_452-511_0.964_2_B
GPL14145_CJA22978_547-606_0.974_1_A
RNASeq_FPKMWBls:00000046.98334From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000272.94809From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000383.02916From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
4.99069From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.675992From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.884761From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1.46719From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
2.00594From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2.06879From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
2.11419From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
2.17074From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
3.53592From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig8538.g5940.t1[100726 mh6]
Methodcurated