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WormBase Tree Display for CDS: CJA27169b

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Name Class

CJA27169bEvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18068
StructureSource_exons (11)
DB_infoDB_remarkCJP-UIG-1 protein; contains similarity to Pfam domain PF00621 (RhoGEF domain); contains similarity to Interpro domains IPR000219 (Dbl homology (DH) domain), IPR035899 (Dbl homology (DH) domain superfamily), IPR001849 (Pleckstrin homology domain), IPR011993 (PH-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
Isoform
VisibleGeneWBGene00182741
Corresponding_transcriptCJA27169b.1
Corresponding_proteinJA41172
Corresponding_oligo_setGPL14145_CJA18695_1411-1470_0.810_87_C
GPL14145_CJA18695_1487-1546_0.804_95_B
GPL14145_CJA18695_1578-1637_0.923_12_A
Matching_cDNAjaponica_GG18564|c3_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA18695_1411-1470_0.810_87_C
GPL14145_CJA18695_1487-1546_0.804_95_B
GPL14145_CJA18695_1578-1637_0.923_12_A
RNASeq_FPKMWBls:000000414.3193From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000278.70957From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000384.77558From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
5.63659From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.50085From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.915115From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1.3525From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
1.48263From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1.66432From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
1.67948From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2.30146From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
2.70879From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
Remarkbased on Augustus prediction Cjap.Contig18068.g24235.t1[100726 mh6]
Methodcurated