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WormBase Tree Display for CDS: CJA35594

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Name Class

CJA35594EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18191
StructureSource_exons16
15452050
27003697
37543849
38974056
49995227
52955393
DB_infoDatabaseTREEFAMTREEFAM_IDTF312844
DB_remarkCJP-UNC-13 protein; contains similarity to Pfam domains PF00168 (C2 domain), PF06292 (MUN domain), PF10540 (); contains similarity to Interpro domains IPR010439 (MUN domain), IPR027080 (Protein Unc-13), IPR019558 (), IPR035892 (C2 domain superfamily), IPR000008 (C2 domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00211441
Corresponding_transcriptCJA35594.1
CJA35594.2
Corresponding_proteinJA46497
Corresponding_oligo_setGPL14145_CJA14489_5677-5736_0.827_63_C
GPL14145_CJA14489_5998-6057_0.895_8_B
GPL14145_CJA14489_6555-6614_0.922_2_A
Matching_cDNAFF111823Inferred_automaticallytranscript_builder.pl
FF129283Inferred_automaticallytranscript_builder.pl
japonica_GG3112|c0_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG16380|c1_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG16380|c6_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA14489_5677-5736_0.827_63_C
GPL14145_CJA14489_5998-6057_0.895_8_B
GPL14145_CJA14489_6555-6614_0.922_2_A
RNASeq_FPKMWBls:000000421.0525From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002722.8787From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003810.0832From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
13.2319From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.4612From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
11.1601From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
5.24814From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
5.99161From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
5.99344From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
6.21472From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
9.18018From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
9.69783From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig18191.g27542.t1[100726 mh6]
Methodcurated