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WormBase Tree Display for CDS: CJA35746

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Name Class

CJA35746EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig16807
StructureSource_exons1102
309483
38164182
42504909
54235444
DB_infoDB_remarkCJP-UNC-5 protein; contains similarity to Pfam domains PF00090 (Thrombospondin type 1 domain), PF13895 (Immunoglobulin domain); contains similarity to Interpro domains IPR036383 (Thrombospondin type-1 (TSP1) repeat superfamily), IPR007110 (Immunoglobulin-like domain), IPR003599 (Immunoglobulin subtype), IPR003598 (Immunoglobulin subtype 2), IPR000884 (Thrombospondin type-1 (TSP1) repeat), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily), IPR037936 (Netrin receptor UNC5)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00211593
Corresponding_transcriptCJA35746.1
Corresponding_proteinJA55552
Matching_cDNAFF122066Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:000000429.2821From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000277.06916From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000383.97853From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
8.21507From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000411.80531From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
2.05552From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
3.8862From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
4.64976From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
4.73776From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
8.87492From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
9.19089From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
9.52521From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig16807.g12778.t1[100726 mh6]
Methodcurated