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WormBase Tree Display for CDS: CJA41266

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Name Class

CJA41266SMapS_parentSequenceCjap.Contig4780
StructureSource_exons149
12181355
14011531
DB_infoDatabaseTREEFAMTREEFAM_IDTF323340
DB_remarkcontains similarity to Pfam domain PF10224 (Short coiled-coil protein); contains similarity to Interpro domain IPR019357 (Short coiled-coil protein)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPredicted
End_not_found
VisibleGeneWBGene00217114
Corresponding_transcriptCJA41266.1
Corresponding_proteinJA46456
RNASeq_FPKMWBls:000000414.2168From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000273.94585From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000385.29604From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
7.19826From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004121.0073From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
23.1662From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
23.4418From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
54.5488From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
55.8971From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
58.6894From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
6.54945From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
6.65697From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig4780.g3411.t1[100726 mh6]
Methodcurated