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WormBase Tree Display for CDS: CRE04535

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Name Class

CRE04535SMapS_parentSequenceCrem_Contig12
StructureSource_exons1153
202287
335779
8401434
16071767
DB_infoDatabaseTREEFAMTREEFAM_IDTF314303
DB_remarkCRE-ABI-1 protein; contains similarity to Pfam domains PF07815 (Abl-interactor HHR), PF14604 (Variant SH3 domain); contains similarity to Interpro domains IPR036028 (SH3-like domain superfamily), IPR001452 (SH3 domain), IPR028457 (ABI family), IPR012849 (Abl-interactor, homeo-domain homologous domain), IPR036993 ()
OriginFrom_laboratoryRW
SpeciesCaenorhabditis remanei
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00055618
Corresponding_transcriptCRE04535.1
Corresponding_proteinRP02371
Corresponding_oligo_setGPL14146_CRE04535_158-217_0.788_100_B
GPL14146_CRE04535_1199-1258_0.955_3_C
GPL14146_CRE04535_1348-1407_0.906_12_A
Matching_cDNADY529476Inferred_automaticallytranscript_builder.pl
DR779683Inferred_automaticallytranscript_builder.pl
DR778958Inferred_automaticallytranscript_builder.pl
DT936250Inferred_automaticallytranscript_builder.pl
DR407669Inferred_automaticallytranscript_builder.pl
DT933904Inferred_automaticallytranscript_builder.pl
DR776631Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14146_CRE04535_1199-1258_0.955_3_C
GPL14146_CRE04535_1348-1407_0.906_12_A
GPL14146_CRE04535_158-217_0.788_100_B
RNASeq_FPKMWBls:000000426.993From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
27.8837From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (54)
WBls:000002718.8419From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
21.3674From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
22.1343From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
5.99131From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003825.2889From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
26.6496From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
5.95001From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:0000041161.583From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
169.03From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
169.432From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
18.8553From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
19.0603From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
19.4508From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
WBls:000006311.3265From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
16.0423From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
17.7001From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
17.9481From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
23.6195From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
39.1515From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
39.677From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
46.2665From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
51.7891From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
75.7404From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
Methodcurated