WormBase Tree Display for CDS: CRE04842b

CRE04842b Evidence: Curator_confirmed: WBPerson1983
  SMap: S_parent: Sequence: Crem_Contig12
  Structure: Source_exons: 1 33
      81 162
      376 590
      1021 1146
      1186 3262
      3311 3660
      3706 3811
      4626 4657
  DB_info: DB_remark: CRE-SCA-1 protein; contains similarity to Pfam domains PF00122 (E1-E2 ATPase), PF00689 (Cation transporting ATPase, C-terminus), PF00690 (Cation transporter/ATPase, N-terminus), PF08282 (haloacid dehalogenase-like hydrolase), PF13246 (Cation transport ATPase (P-type)); contains similarity to Interpro domains IPR023298 (P-type ATPase, transmembrane domain superfamily), IPR036412 (HAD-like superfamily), IPR008250 (P-type ATPase, A domain superfamily), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR001757 (P-type ATPase), IPR023299 (P-type ATPase, cytoplasmic domain N), IPR030332 (), IPR005782 (P-type ATPase, subfamily IIA, SERCA-type), IPR023214 (HAD superfamily), IPR006068 (Cation-transporting P-type ATPase, C-terminal)
  Origin: From_laboratory: RW
    Species: Caenorhabditis remanei
  Properties: Coding: CDS
      Prediction_status: Partially_confirmed
    Isoform: Accession_evidence: NDB DR780136
      Curator_confirmed: WBPerson1983
      From_analysis: RNASeq_hillier_remanei
  Visible: Gene: WBGene00055828
    Corresponding_transcript: CRE04842b.1
    Corresponding_protein: RP50462
    Corresponding_oligo_set: GPL14146_CRE04842_1731-1790_0.838_40_C
      GPL14146_CRE04842_2134-2193_0.854_27_B
      GPL14146_CRE04842_2243-2302_0.870_18_A
    Matching_cDNA: DR780136 Inferred_automatically: transcript_builder.pl
      DR409584 Inferred_automatically: transcript_builder.pl
      DY528229 Inferred_automatically: transcript_builder.pl
      DR778922 Inferred_automatically: transcript_builder.pl
      DR781219 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14146_CRE04842_1731-1790_0.838_40_C
      GPL14146_CRE04842_2134-2193_0.854_27_B
      GPL14146_CRE04842_2243-2302_0.870_18_A
    RNASeq_FPKM: WBls:0000004 6.86758 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        7.67368 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 (54)
      WBls:0000027 349.3 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        388.873 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        407.363 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        56.1585 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 145.956 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        375.889 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        376.809 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
      WBls:0000041 110.154 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        113.538 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        234.286 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        235.484 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        267.083 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        83.9319 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
      WBls:0000063 273.334 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
        285.781 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
        292.396 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
        316.82 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
        321.14 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
        518.354 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
        534.788 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
        558.341 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
        568.997 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        597.833 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
    Remark: [131023 pad] Cloned from the template CDS CRE04842, this isoform utilises novel splicing in what was the final exon of the locus to extend 3' into a new termination frame. Accession_evidence: NDB DR780136
        Curator_confirmed: WBPerson1983
        From_analysis: RNASeq_hillier_remanei
  Method: curated