WormBase Tree Display for CDS: F09B9.2a
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| F09B9.2a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F09B9 | |||
| Structure | Source_exons (12) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q19240 | ||
| UniProt | UniProtAcc | Q19240 | ||||
| AlphaFold | entry | Q19240 | ||||
| NCBI_protein | GI_number | GI:3875561 | ||||
| Protein_id | CHROMOSOME_X | CAA90057 | 1 | |||
| DB_remark | UNC-115 protein; contains similarity to Pfam domains PF00412 (LIM domain), PF02209 (Villin headpiece domain); contains similarity to Interpro domains IPR003128 (Villin headpiece), IPR001781 (Zinc finger, LIM-type), IPR036886 (Villin headpiece domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | NDB | CEK097F4F | |||
| Inferred_automatically | transcript_builder | |||||
| Visible | Gene | WBGene00006839 | ||||
| Corresponding_transcript | F09B9.2a.1 | |||||
| Corresponding_protein | CE15759 | |||||
| Corresponding_PCR_product | cenix:54-c12 | |||||
| mv_AAC35506 | ||||||
| mv_F09B9.2 | ||||||
| sjj_F09B9.2 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA | male_Nanopore_Roach_101524 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_103051 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_7022 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_19733 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_20963 | ||||||
| young_adult_Nanopore_Roach_79623 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_87793 | ||||||
| young_adult_Nanopore_Roach_132074 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_6804 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_41109 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_65515 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_63747 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_59314 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_79588 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_64416 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_6468 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_47199 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_106713 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_40232 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_87642 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_17227 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_82914 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_44902 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_32537 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_102033 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_5996 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_62437 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_26002 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_98993 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_3920 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_64157 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_26184 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_43026 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_103113 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_27101 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_6206 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_63168 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_45815 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_30146 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_60511 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_16962 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_20258 | Inferred_automatically | transcript_builder.pl | ||||
| yk1579d03.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1658b11.5 | Inferred_automatically | transcript_builder.pl | ||||
| EC034618 | Inferred_automatically | transcript_builder.pl | ||||
| yk1684f05.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_215167 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_7196 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_25808 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_62650 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_193647 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_357699 | Inferred_automatically | transcript_builder.pl | ||||
| yk1437a10.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1603b09.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1222g02.5 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_189724 | Inferred_automatically | transcript_builder.pl | ||||
| yk1672c08.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_113896 | Inferred_automatically | transcript_builder.pl | ||||
| yk6d11.5 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_260618 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_219937 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_235296 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_157967 | Inferred_automatically | transcript_builder.pl | ||||
| yk1078c12.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_143285 | Inferred_automatically | transcript_builder.pl | ||||
| yk228g3.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk811f02.3 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF021C10_1 | Inferred_automatically | transcript_builder.pl | ||||
| yk1513f11.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk766b03.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_39029 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_6529 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_285359 | Inferred_automatically | transcript_builder.pl | ||||
| yk248f3.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1032g10.5 | Inferred_automatically | transcript_builder.pl | ||||
| EC015764 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG4934|c0_g1_i2 | Inferred_automatically | transcript_builder.pl | ||||
| yk97f4.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_269863 | Inferred_automatically | transcript_builder.pl | ||||
| yk1451b11.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_298770 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_7882 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_258048 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_381350 | Inferred_automatically | transcript_builder.pl | ||||
| yk1561d03.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1348e09.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_154793 | Inferred_automatically | transcript_builder.pl | ||||
| yk1332g09.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_310197 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_87885 | Inferred_automatically | transcript_builder.pl | ||||
| yk1686a04.5 | Inferred_automatically | transcript_builder.pl | ||||
| EC014501 | Inferred_automatically | transcript_builder.pl | ||||
| yk471d1.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_214725 | Inferred_automatically | transcript_builder.pl | ||||
| yk811f02.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1356e02.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1160a11.5 | Inferred_automatically | transcript_builder.pl | ||||
| EC023911 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_132535 | Inferred_automatically | transcript_builder.pl | ||||
| yk1756c08.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1332g09.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1643c01.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1616g09.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_101684 | Inferred_automatically | transcript_builder.pl | ||||
| yk371a8.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_33169 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_138248 | Inferred_automatically | transcript_builder.pl | ||||
| yk1023g07.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_159563 | Inferred_automatically | transcript_builder.pl | ||||
| yk1686a04.3 | Inferred_automatically | transcript_builder.pl | ||||
| EC031208 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_114965 | Inferred_automatically | transcript_builder.pl | ||||
| yk1666e06.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_173979 | Inferred_automatically | transcript_builder.pl | ||||
| EB996068 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_249686 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_320824 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_151422 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (16) | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Actin-binding lim zn-finger protein limatin involved in axon guidance | Accession_evidence | UniProt | TR:Q19240 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
