WormBase Tree Display for CDS: F09B9.2b
expand all nodes | collapse all nodes | view schema
| F09B9.2b | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F09B9 | |||
| Structure | Source_exons (11) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q95QM5 | ||
| UniProt | UniProtAcc | Q95QM5 | ||||
| UniProt_GCRP | UniProtAcc | Q95QM5 | ||||
| AlphaFold | entry | Q95QM5 | ||||
| NCBI_protein | GI_number | GI:15718124 | ||||
| TREEFAM | TREEFAM_ID | TF318042 | ||||
| Protein_id | CHROMOSOME_X | CAC70079 | 1 | |||
| DB_remark | UNC-115 protein; contains similarity to Pfam domains PF00412 (LIM domain), PF02209 (Villin headpiece domain); contains similarity to Interpro domains IPR003128 (Villin headpiece), IPR001781 (Zinc finger, LIM-type), IPR036886 (Villin headpiece domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | NDB | AV189942 | |||
| Inferred_automatically | transcript_builder | |||||
| Visible | Gene | WBGene00006839 | ||||
| Corresponding_transcript | F09B9.2b.1 | |||||
| Corresponding_protein | CE02176 | |||||
| Corresponding_PCR_product | cenix:54-c12 | |||||
| mv_AAC35506 | ||||||
| mv_F09B9.2 | ||||||
| sjj_F09B9.2 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA | male_Nanopore_Roach_103051 | |||||
| young_adult_Nanopore_Roach_7022 | ||||||
| young_adult_Nanopore_Roach_19733 | ||||||
| young_adult_Nanopore_Roach_20963 | ||||||
| young_adult_Nanopore_Roach_132074 | ||||||
| male_Nanopore_Roach_6804 | ||||||
| L4_Nanopore_Roach_41109 | ||||||
| adult_Nanopore_Roach_65515 | ||||||
| L1_Nanopore_Roach_63747 | ||||||
| L2_Nanopore_Roach_79588 | ||||||
| L2_Nanopore_Roach_64416 | ||||||
| L2_Nanopore_Roach_6468 | ||||||
| L2_Nanopore_Roach_47199 | ||||||
| adult_Nanopore_Roach_106713 | ||||||
| L2_Nanopore_Roach_87642 | ||||||
| L4_Nanopore_Roach_17227 | ||||||
| L3_Nanopore_Roach_82914 | ||||||
| L3_Nanopore_Roach_44902 | ||||||
| L2_Nanopore_Roach_32537 | ||||||
| L2_Nanopore_Roach_102033 | ||||||
| L3_Nanopore_Roach_5996 | ||||||
| L3_Nanopore_Roach_26002 | ||||||
| L4_Nanopore_Roach_3920 | ||||||
| L1_Nanopore_Roach_26184 | ||||||
| L3_Nanopore_Roach_43026 | ||||||
| L1_Nanopore_Roach_103113 | ||||||
| L2_Nanopore_Roach_27101 | ||||||
| L1_Nanopore_Roach_6206 | ||||||
| adult_Nanopore_Roach_45815 | ||||||
| L4_Nanopore_Roach_30146 | ||||||
| L3_Nanopore_Roach_60511 | ||||||
| L1_Nanopore_Roach_16962 | ||||||
| male_Nanopore_Roach_20258 | ||||||
| EM_Nanopore_Li_115528 | Inferred_automatically | transcript_builder.pl | ||||
| yk569e5.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk568h8.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk564d9.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk678c6.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk294g2.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk476e11.5 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (16) | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Actin-binding lim zn-finger protein limatin involved in axon guidance | Accession_evidence | UniProt | TR:Q95QM5 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
