WormBase Tree Display for Sequence: F11A6

F11A6 DNA: F11A6 34727
  SMap: S_child: Gene_child (16)
      CDS_child: F11A6.1a 22216 26803
        F11A6.1b:wp245 22216 26803
        F11A6.2 28535 27204
        F11A6.2:wp114 28535 27280
        F11A6.2:wp177 28535 27245
        F11A6.15:wp230 33524 32323
        F11A6.15a 32409 32323
        F11A6.15b 33063 32397
        F11A6.16 1175 1294
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g22n11_x24_I_m 28535 27207
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g41n11_x24_I_p 23077 26800
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g51n11_x24_I_p 22216 23256
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g26n11_x24_I_p 22216 26800
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g18n11_x24_I_m 28535 27207
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g21_x24_I_m 32409 32326
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g26n11e6k54_x24_I_p 26411 26562
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g25_x24_I_m 32409 32326
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g34n11_x24_I_m 28535 27207
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g40n11_x24_I_p 22216 26800
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g30n11_x24_I_p 26482 26800
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g10_x24_I_m 32409 32326
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g43n11_x24_I_p 22216 23142
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g50_x24_I_p 24335 26554
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g19n11_x24_I_m 28535 27207
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g45_x24_I_p 23245 24052
        RNASEQ_embryo_him-8_20dC_post-L1_g70n11_x24_I_m 28535 28260
        RNASEQ_embryo_him-8_20dC_post-L1_g21n11_x24_I_p 22216 26800
        RNASEQ_embryo_him-8_20dC_post-L1_g63_x24_I_m 27423 27207
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g27_x24_I_m 32409 32326
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g23n11e3k54_x24_I_p 24011 24463
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g23n11_x24_I_p 22216 26800
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g33n11_x24_I_m 28535 27207
        RNASEQ_L4_soma_JK1107_no_DNaseI_g18_x24_I_m 32409 32326
        RNASEQ_L4_soma_JK1107_no_DNaseI_g31n11_x24_I_p 22216 26800
        RNASEQ_L4_soma_JK1107_no_DNaseI_g30n11_x24_I_m 28535 27207
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g28n11e3k50_x24_I_p 24011 24457
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g28n11e5k64_x24_I_p 26100 26292
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g24n11_x24_I_m 28535 27207
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g28n11_x24_I_p 22216 26800
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g46_x24_I_m 32409 32326
        RNASEQ_early_embryo_g11n11_x24_I_p 22216 26800
        RNASEQ_early_embryo_g64_x24_I_m 32409 32341
        RNASEQ_early_embryo_g79_x24_I_m 27324 27161
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g64_x24_I_m 32409 32326
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g15n11_x24t1_I_p 22216 26800
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g66_x24_I_m 27423 27207
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g65n11_x24_I_m 28535 27802
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g18n11_x24_I_p 22216 26800
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g62_x24_I_m 28286 27406
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g18n11s5k52_x24_I_p 26482 26554
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g73_x24_I_m 27324 27086
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g22n11_x24_I_p 22216 26800
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g54n11_x24_I_m 28535 27207
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g45n11_x24_I_m 28535 27207
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g21n11e5k85_x24_I_p 26100 26292
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g21n11_x24_I_p 22216 26800
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g58_x24_I_p 23077 26800
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g40n11_x24_I_m 28535 27207
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g25n11_x24_I_p 22216 22983
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g51n11_x24_I_p 22216 26800
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g70_x24_I_m 28430 27207
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g67_x24_I_m 32409 32329
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g52n11_x24_I_m 28535 27207
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g50n11_x24_I_p 22216 26800
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g77_x24_I_m 32409 32326
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g48_x24_I_p 22216 26800
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g18n11_x24_I_m 28535 27207
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g32_x24_I_m 32409 32335
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g46n11_x24_I_p 22216 26800
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g48n11_x24_I_m 28535 27207
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g37n11_x24t1_I_p 22216 26800
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g29n11_x24_I_m 28535 27207
        F11A6.gc1 5205 1472
        F11A6.gc2 5268 6660
        F11A6.gc3 22216 25635
        F11A6.gc4 26065 26803
        F11A6.gc5 28535 27204
        F11A6.gc6 33115 32318
        ContigI.elegans.jigsaw.2234.mRNA2234 28575 27093
        ContigI.elegans.jigsaw.2233.mRNA2233 22116 27141
        AG1201_RIT1P.1781.T1 1175 1294
        AG1201_RIT1P.1755.T1 8113 8238
        AG1201_RIT1P.1523.T1 20699 20902
        AG1201_F11A6.1.T2 22216 26803
        AG1201_F11A6.1.T1 23077 26803
        AG1201_F11A6.2.T5 27876 27204
        AG1201_F11A6.2.T3 28535 27204
        AG1201_F11A6.2.T1 28535 27441
        AG1201_RIT1M.1051.T1 32409 32323
        AG1201_RIT1M.3.T1 33524 33435
        AG1201_RIT1M.1862.T1 34577 34407
      Transcript (18)
      Pseudogene: F11A6.3 33982 34693
      PCR_product: cenix:71-b7 25123 25626
        cenix:78-e3 27766 28649
        mv_AAB63525 22217 26801
        mv_F11A6.1b 22217 26801
        mv_F11A6.2 27282 28534
        p_F11A6.1a_93 20216 22215
        sjj_F11A6.1 25296 26952
        sjj_F11A6.2 27203 28795
      Allele (758)
      Oligo_set: Aff_F11A6.1A 25531 26803
        Aff_F11A6.1B 25999 26803
        Aff_F11A6.2 28328 27280
      Feature_object (355)
      Feature_data: F11A6:Polysome 1 34727
        F11A6:TranscriptionallyActiveRegion 1 34727
        F11A6:ChIPSeqTF 1 34727
        F11A6:TRF 1 34727
        F11A6:Dust 1 34727
        F11A6:inverted 1 34727
      Homol_data (20)
  Structure: From: Source: CHROMOSOME_I
    Overlap_right: T22H2 34509
    Overlap_left: W04G5
    Clone_left_end: F11A6 1
      T22H2 34509
    Clone_right_end: W04G5 7149
      F11A6 34727
  DB_info: Database: EMBL NDB_AC Z81498
        NDB_SV Z81498.1
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Lennard N
    From_laboratory: HX
    Date_directory: 970206
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: F11A6
  Properties: Genomic_canonical
    Checksum: MD5: da4535fc6fd4f2a44e2e2bb3d01734da
    Status: Finished: 06 Feb 1997 00:00:00
      Submitted: 06 Nov 1996 00:00:00
      Annotated: 15 Jul 1997 00:00:00
  Map: Sequence-I Ends: Left: 5849
        Right: 5874
  Interpolated_map_position: I 9.52115
  Assembly_tags: Clone left end 1 4
    Clone right end 7149 7146 W04G5
      34727 34724
    Finished Left 1 4
    annotation 3621 3629 The overlapping cosmid W04G5 appears to have deleted a copy of the repeating octomer ATGTAGGC
      3942 3945 The overlapping cosmid W04G5 appears to have deleted bases from this tandem repeat region.
    Finished Right 34727 34724
  Method: Genomic_canonical