WormBase Tree Display for CDS: F11C3.2
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| F11C3.2 | Evidence | Curator_confirmed | WBPerson1983 | |||
|---|---|---|---|---|---|---|
| Inferred_automatically | make_isoforms.pl | |||||
| SMap | S_parent | Sequence | F11C3 | |||
| Structure | Source_exons | 1 | 53 | |||
| 101 | 176 | |||||
| 219 | 359 | |||||
| 400 | 675 | |||||
| 725 | 953 | |||||
| 998 | 1093 | |||||
| 1660 | 2086 | |||||
| 2136 | 2378 | |||||
| 3052 | 3217 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | G5EGP1 | ||
| UniProt | UniProtAcc | G5EGP1 | ||||
| UniProt_GCRP | UniProtAcc | G5EGP1 | ||||
| AlphaFold | entry | G5EGP1 | ||||
| NCBI_protein | GI_number | GI:1003367641 | ||||
| Protein_id | CHROMOSOME_I | CAB04088 | 2 | |||
| DB_remark | UNC-122 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF02191 (Olfactomedin-like domain); contains similarity to Interpro domains IPR008160 (Collagen triple helix repeat), IPR003112 (Olfactomedin-like domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00006845 | ||||
| Corresponding_transcript | F11C3.2.1 | |||||
| Corresponding_protein | CE51321 | |||||
| Corresponding_PCR_product | cenix:147-a1 | |||||
| mv_F11C3.2 | ||||||
| sjj_F11C3.2 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA | L1_Nanopore_Roach_62533 | Inferred_automatically | transcript_builder.pl | |||
| L2_Nanopore_Roach_85351 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_258884 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR087D5_1 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG6125|c12_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| yk410e3.3 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG6125|c5_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF087D5_1 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_170168 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00030818 | |||||
| WBRNAi00089931 | ||||||
| WBRNAi00090091 | ||||||
| WBRNAi00044367 | ||||||
| WBRNAi00089796 | ||||||
| WBRNAi00090249 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Olfactomedin-like domain-containing protein | Accession_evidence | UniProt | TR:G5EGP1 | ||
| RNASeq_FPKM (74) | ||||||
| Remark | [151107 pad] Modified this annotation based on the RNASeq splice data. | Curator_confirmed | WBPerson1983 | |||
| From_analysis | RNASeq_splice | |||||
| Method | curated |
