WormBase Tree Display for CDS: F17E5.1b
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F17E5.1b | SMap | S_parent | Sequence | F17E5 | ||
---|---|---|---|---|---|---|
Structure | Source_exons (14) | |||||
DB_info | Database | SwissProt | UniProtAcc | P54936 | ||
UniProtIsoformAcc | P54936-2 | |||||
UniProt | UniProtAcc | P54936 | ||||
UniProt_GCRP | UniProtAcc | P54936 | ||||
AlphaFold | entry | P54936 | ||||
NCBI_protein | GI_number | GI:13548308 | ||||
Protein_id | CHROMOSOME_X | CAA90759 | 2 | |||
DB_remark | LIN-2 protein; contains similarity to Pfam domains PF00018 (SH3 domain), PF00595 (PDZ domain), PF00625 (Guanylate kinase), PF02828 (L27 domain); contains similarity to Interpro domains IPR008145 (Guanylate kinase/L-type calcium channel beta subunit), IPR036028 (SH3-like domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001478 (PDZ domain), IPR036034 (PDZ superfamily), IPR014775 (L27 domain, C-terminal), IPR001452 (SH3 domain), IPR004172 (L27 domain) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Accession_evidence | NDB | CELIN2B | |||
Inferred_automatically | transcript_builder | |||||
Visible | Gene | WBGene00002991 | ||||
Corresponding_transcript | F17E5.1b.1 | |||||
Corresponding_protein | CE27132 | |||||
Corresponding_PCR_product | cenix:147-c4 | |||||
mv_CAA63314 | ||||||
mv_CAA63315 | ||||||
sjj_F17E5.1 | ||||||
Corresponding_oligo_set (16) | ||||||
Matching_cDNA | male_Nanopore_Roach_125106 | |||||
L4_Nanopore_Roach_13107 | ||||||
L3_Nanopore_Roach_5672 | ||||||
L1_Nanopore_Roach_5835 | ||||||
adult_Nanopore_Roach_5551 | ||||||
L1_Nanopore_Roach_93988 | ||||||
L2_Nanopore_Roach_96272 | ||||||
OSTF155A6_1 | Inferred_automatically | transcript_builder.pl | ||||
X92565 | Inferred_automatically | transcript_builder.pl | ||||
RNAi_result | WBRNAi00013468 | |||||
WBRNAi00030265 | ||||||
WBRNAi00044888 | ||||||
WBRNAi00000540 | ||||||
WBRNAi00076312 | ||||||
Microarray_results (20) | ||||||
Brief_identification | Protein lin-2 | Accession_evidence | UniProt | SP:P54936 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 31 Mar 2001 00:00:00 | WBPerson1846 | ||||
Remark | 951117: Splice sites for exon 6 - 7 utilise the rare GC..AG intron type | |||||
[010331 dl] Modified prediction based on mRNA X92565 | Curator_confirmed | WBPerson1846 | ||||
Method | curated |