WormBase Tree Display for CDS: F26F12.7
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| F26F12.7 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F26F12 | |||
| Structure | Source_exons | 1 | 330 | |||
| 400 | 1392 | |||||
| 1441 | 2519 | |||||
| 2571 | 3900 | |||||
| 3972 | 5317 | |||||
| 5369 | 5640 | |||||
| 5695 | 5834 | |||||
| DB_info | Database | SwissProt | UniProtAcc | G5EBZ4 | ||
| UniProt | UniProtAcc | G5EBZ4 | ||||
| UniProt_GCRP | UniProtAcc | G5EBZ4 | ||||
| AlphaFold | entry | G5EBZ4 | ||||
| NCBI_protein | GI_number | GI:351020697 | ||||
| TREEFAM | TREEFAM_ID | TF300674 | ||||
| Protein_id | CHROMOSOME_V | CCD62685 | 1 | |||
| DB_remark | LET-418 protein; contains similarity to Pfam domains PF00176 (SNF2-related domain), PF00271 (Helicase conserved C-terminal domain), PF00385 (Chromo (CHRromatin Organisation MOdifier) domain), PF00628 (PHD-finger), PF06461 (CHD subfamily II, SANT-like domain), PF06465 (CHD subfamily II, DUF1087), PF08073 (CHDNT (NUC034) domain), PF08074 (CHDCT2 (NUC038) domain); contains similarity to Interpro domains IPR023780 (Chromo domain), IPR016197 (Chromo-like domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR011011 (Zinc finger, FYVE/PHD-type), IPR001650 (Helicase, C-terminal domain-like), IPR019787 (Zinc finger, PHD-finger), IPR009463 (Domain of unknown function DUF1087), IPR038718 (SNF2-like, N-terminal domain superfamily), IPR001965 (Zinc finger, PHD-type), IPR000953 (Chromo/chromo shadow domain), IPR000330 (SNF2, N-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR009462 (CHD subfamily II, SANT-like domain), IPR012958 (CHD, N-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR012957 (CHD, C-terminal 2) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00002637 | ||||
| Corresponding_transcript | F26F12.7.1 | |||||
| Corresponding_protein | CE17716 | |||||
| Corresponding_PCR_product | cenix:38-d11 | |||||
| mv_F26F12.7 | ||||||
| sjj2_F26F12.7.1 | ||||||
| sjj_F26F12.7 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA (109) | ||||||
| RNAi_result (19) | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Protein let-418 | Accession_evidence | UniProt | SP:G5EBZ4 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf000128 | |||||
| Method | curated |
